Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOH entry

There is 1 chain in PDB entry 5XOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8MET 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5XOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 23Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
67 82Right-handed alpha
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
119 128Right-handed alpha
Helix 8
AA8
A
128 133Right-handed alpha
Helix 9
AA9
A
134 136Right-handed 310
Helix 10
AB1
A
137 145Right-handed alpha
Helix 11
AB2
A
147 154Right-handed alpha
Helix 12
AB3
A
156 164Right-handed alpha
Helix 13
AB4
A
164 187Right-handed alpha
Helix 14
AB5
A
207 217Right-handed alpha
Helix 15
AB6
A
227 232Right-handed alpha
Helix 16
AB7
A
262 266Right-handed 310
Helix 17
AB8
A
267 282Right-handed alpha
Helix 18
AB9
A
303 320Right-handed alpha
Helix 19
AC1
A
327 338Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5XOH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
221 226parallel
Strand 3
A
198 202parallel
Strand 4
A
256 260parallel
Strand 5
A
287 292parallel
Strand 6
A
352 355anti-parallel
Strand 7
A
347 349anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il