Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOI entry

There is 1 chain in PDB entry 5XOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 145HIS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5XOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 178Right-handed alpha
Helix 2
AA2
A
226 247Right-handed alpha
Helix 3
AA3
A
285 291Right-handed alpha
Helix 4
AA4
A
313 317Right-handed 310
Helix 5
AA5
A
332 335Right-handed 310
Helix 6
AA6
A
350 358Right-handed alpha
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There are 3 sheets in PDB entry 5XOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
327 330anti-parallel
Strand 4
A
295 301anti-parallel
Strand 5
A
363 369anti-parallel
Strand 6
A
264 279anti-parallel
Strand 7
A
192 201anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
327 330anti-parallel
Strand 4
A
295 301anti-parallel
Strand 5
A
363 369anti-parallel
Strand 6
A
264 279anti-parallel
Strand 7
A
338 345anti-parallel
Strand 8
A
303 309anti-parallel
Strand 9
A
318 322anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
210 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il