Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOO entry

There are 2 chains in PDB entry 5XOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 67LEU 415
B
 GLU 65LEU 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5XOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 79Right-handed alpha
Helix 2
AA2
A
88 102Right-handed alpha
Helix 3
AA3
A
153 167Right-handed alpha
Helix 4
AA4
A
186 190Right-handed 310
Helix 5
AA5
A
191 196Right-handed alpha
Helix 6
AA6
A
258 263Right-handed alpha
Helix 7
AA7
A
265 271Right-handed alpha
Helix 8
AA8
A
280 296Right-handed alpha
Helix 9
AA9
A
330 333Right-handed 310
Helix 10
AB1
A
334 341Right-handed alpha
Helix 11
AB2
A
345 357Right-handed alpha
Helix 12
AB3
A
360 370Right-handed alpha
Helix 13
AB4
A
379 404Right-handed alpha
Helix 14
AB5
A
405 409Right-handed alpha
Helix 15
AB6
B
70 79Right-handed alpha
Helix 16
AB7
B
88 102Right-handed alpha
Helix 17
AB8
B
153 167Right-handed alpha
Helix 18
AB9
B
182 186Right-handed alpha
Helix 19
AC1
B
187 190Right-handed 310
Helix 20
AC2
B
191 196Right-handed alpha
Helix 21
AC3
B
258 263Right-handed alpha
Helix 22
AC4
B
266 271Right-handed alpha
Helix 23
AC5
B
280 296Right-handed alpha
Helix 24
AC6
B
330 333Right-handed 310
Helix 25
AC7
B
334 341Right-handed alpha
Helix 26
AC8
B
345 357Right-handed alpha
Helix 27
AC9
B
360 370Right-handed alpha
Helix 28
AD1
B
379 404Right-handed alpha
Helix 29
AD2
B
405 409Right-handed alpha
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There are 8 sheets in PDB entry 5XOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
118 122anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
227 234anti-parallel
Strand 5
A
175 181anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
206 208anti-parallel
Strand 3
A
221 222anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
302 308anti-parallel
Strand 3
A
311 315anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
410 411parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
118 122anti-parallel
Strand 3
B
128 134anti-parallel
Strand 4
B
227 234anti-parallel
Strand 5
B
175 181anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
206 208anti-parallel
Strand 3
B
221 222anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 246first strand
Strand 2
B
302 308anti-parallel
Strand 3
B
311 314anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
410 411parallel
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