Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOQ entry

There are 6 chains in PDB entry 5XOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 43
A
 CYS 45ARG 309
B
 HIS 0VAL 43
B
 CYS 45ARG 309
C
 GLY 260ILE 267
D
 GLY 260ILE 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5XOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
73 87Right-handed alpha
Helix 4
AA4
A
99 109Right-handed alpha
Helix 5
AA5
A
117 119Right-handed 310
Helix 6
AA6
A
120 134Right-handed alpha
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
156 166Right-handed alpha
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
233 237Right-handed 310
Helix 11
AB2
A
244 260Right-handed alpha
Helix 12
AB3
A
264 279Right-handed alpha
Helix 13
AB4
A
280 284Right-handed 310
Helix 14
AB5
A
295 300Right-handed 310
Helix 15
AB6
A
302 309Right-handed 310
Helix 16
AB7
B
6 11Right-handed 310
Helix 17
AB8
B
43 58Right-handed alpha
Helix 18
AB9
B
73 87Right-handed alpha
Helix 19
AC1
B
99 109Right-handed alpha
Helix 20
AC2
B
117 119Right-handed 310
Helix 21
AC3
B
120 134Right-handed alpha
Helix 22
AC4
B
147 156Right-handed alpha
Helix 23
AC5
B
156 165Right-handed alpha
Helix 24
AC6
B
179 191Right-handed alpha
Helix 25
AC7
B
233 237Right-handed 310
Helix 26
AC8
B
244 260Right-handed alpha
Helix 27
AC9
B
264 279Right-handed alpha
Helix 28
AD1
B
280 284Right-handed 310
Helix 29
AD2
B
295 300Right-handed 310
Helix 30
AD3
B
302 309Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5XOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
B
16 18parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
287 292parallel
Strand 5
B
171 175parallel
Strand 6
B
198 204parallel
Strand 7
B
239 243parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
287 292parallel
Strand 4
A
171 175parallel
Strand 5
A
198 204parallel
Strand 6
A
239 243parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
89 95parallel
Strand 3
A
66 70parallel
Strand 4
A
138 139parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
89 95parallel
Strand 3
B
66 70parallel
Strand 4
B
138 139parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il