Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XOX entry

There are 6 chains in PDB entry 5XOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 233
B
 LYS 5LEU 233
C
 LYS 5LEU 233
D
 LYS 5LEU 233
E
 LYS 5LEU 233
F
 VAL 9ASN 108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 57 helices in PDB entry 5XOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 13Right-handed 310
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
47 65Right-handed alpha
Helix 4
AA4
A
88 92Right-handed 310
Helix 5
AA5
A
93 117Right-handed alpha
Helix 6
AA6
A
139 172Right-handed alpha
Helix 7
AA7
A
174 183Right-handed alpha
Helix 8
AA8
A
186 196Right-handed alpha
Helix 9
AA9
A
206 211Right-handed alpha
Helix 10
AB1
A
228 233Right-handed alpha
Helix 11
AB2
B
6 13Right-handed 310
Helix 12
AB3
B
32 41Right-handed alpha
Helix 13
AB4
B
47 65Right-handed alpha
Helix 14
AB5
B
88 92Right-handed 310
Helix 15
AB6
B
93 117Right-handed alpha
Helix 16
AB7
B
139 170Right-handed alpha
Helix 17
AB8
B
174 183Right-handed alpha
Helix 18
AB9
B
186 196Right-handed alpha
Helix 19
AC1
B
201 205Right-handed 310
Helix 20
AC2
B
206 211Right-handed alpha
Helix 21
AC3
B
228 233Right-handed alpha
Helix 22
AC4
C
6 13Right-handed 310
Helix 23
AC5
C
32 40Right-handed alpha
Helix 24
AC6
C
47 65Right-handed alpha
Helix 25
AC7
C
88 92Right-handed 310
Helix 26
AC8
C
93 117Right-handed alpha
Helix 27
AC9
C
139 172Right-handed alpha
Helix 28
AD1
C
174 183Right-handed alpha
Helix 29
AD2
C
186 197Right-handed alpha
Helix 30
AD3
C
201 205Right-handed 310
Helix 31
AD4
C
206 212Right-handed alpha
Helix 32
AD5
C
228 233Right-handed alpha
Helix 33
AD6
D
6 13Right-handed 310
Helix 34
AD7
D
32 40Right-handed alpha
Helix 35
AD8
D
47 65Right-handed alpha
Helix 36
AD9
D
88 92Right-handed 310
Helix 37
AE1
D
93 117Right-handed alpha
Helix 38
AE2
D
139 172Right-handed alpha
Helix 39
AE3
D
174 183Right-handed alpha
Helix 40
AE4
D
186 196Right-handed alpha
Helix 41
AE5
D
201 205Right-handed 310
Helix 42
AE6
D
206 211Right-handed alpha
Helix 43
AE7
D
228 233Right-handed alpha
Helix 44
AE8
E
6 13Right-handed 310
Helix 45
AE9
E
32 40Right-handed alpha
Helix 46
AF1
E
47 65Right-handed alpha
Helix 47
AF2
E
88 92Right-handed 310
Helix 48
AF3
E
93 117Right-handed alpha
Helix 49
AF4
E
139 170Right-handed alpha
Helix 50
AF5
E
174 183Right-handed alpha
Helix 51
AF6
E
186 196Right-handed alpha
Helix 52
AF7
E
206 211Right-handed alpha
Helix 53
AF8
E
228 233Right-handed alpha
Helix 54
AF9
F
9 13Right-handed 310
Helix 55
AG1
F
88 92Right-handed 310
Helix 56
AG2
F
93 98Right-handed 310
Helix 57
AG3
F
139 149Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5XOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 137first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
69 74anti-parallel
Strand 5
A
213 216anti-parallel
Strand 6
A
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 137first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
69 74anti-parallel
Strand 5
B
213 216anti-parallel
Strand 6
B
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 137first strand
Strand 2
C
23 30anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
69 74anti-parallel
Strand 5
C
213 215anti-parallel
Strand 6
C
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 137first strand
Strand 2
D
23 30anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
69 74anti-parallel
Strand 5
D
213 216anti-parallel
Strand 6
D
220 221anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
130 137first strand
Strand 2
E
23 30anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
69 74anti-parallel
Strand 5
E
213 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
23 25first strand
Strand 2
F
135 137anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il