Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XOY entry

There are 2 chains in PDB entry 5XOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	HIS 355
B	LEU 6	THR 354

There are 26 helices in PDB entry 5XOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	17	Right-handed alpha
Helix 2	AA2	A	25	39	Right-handed alpha
Helix 3	AA3	A	92	105	Right-handed alpha
Helix 4	AA4	A	107	113	Right-handed alpha
Helix 5	AA5	A	129	136	Right-handed alpha
Helix 6	AA6	A	137	139	Right-handed 310
Helix 7	AA7	A	182	203	Right-handed alpha
Helix 8	AA8	A	206	210	Right-handed 310
Helix 9	AA9	A	242	253	Right-handed alpha
Helix 10	AB1	A	275	288	Right-handed alpha
Helix 11	AB2	A	301	307	Right-handed alpha
Helix 12	AB3	A	321	325	Right-handed 310
Helix 13	AB4	A	334	354	Right-handed alpha
Helix 14	AB5	B	7	17	Right-handed alpha
Helix 15	AB6	B	25	39	Right-handed alpha
Helix 16	AB7	B	92	105	Right-handed alpha
Helix 17	AB8	B	107	113	Right-handed alpha
Helix 18	AB9	B	129	136	Right-handed alpha
Helix 19	AC1	B	137	139	Right-handed 310
Helix 20	AC2	B	182	202	Right-handed alpha
Helix 21	AC3	B	206	210	Right-handed 310
Helix 22	AC4	B	242	253	Right-handed alpha
Helix 23	AC5	B	275	288	Right-handed alpha
Helix 24	AC6	B	301	307	Right-handed alpha
Helix 25	AC7	B	321	325	Right-handed 310
Helix 26	AC8	B	334	353	Right-handed alpha

There are 8 sheets in PDB entry 5XOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	51	56	anti-parallel
Strand 3	A	114	121	anti-parallel
Strand 4	A	60	67	parallel
Strand 5	A	143	147	parallel
Strand 6	A	314	317	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	83	85	anti-parallel
Strand 3	A	331	333	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	293	297	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	221	first strand
Strand 2	A	228	237	anti-parallel
Strand 3	A	161	170	anti-parallel
Strand 4	A	259	266	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	114	121	anti-parallel
Strand 4	B	60	67	parallel
Strand 5	B	143	147	parallel
Strand 6	B	314	318	parallel
Strand 7	B	151	159	anti-parallel
Strand 8	B	269	270	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	51	56	anti-parallel
Strand 3	B	114	121	anti-parallel
Strand 4	B	60	67	parallel
Strand 5	B	143	147	parallel
Strand 6	B	314	318	parallel
Strand 7	B	151	159	anti-parallel
Strand 8	B	293	297	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	83	85	anti-parallel
Strand 3	B	331	333	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	220	first strand
Strand 2	B	226	237	anti-parallel
Strand 3	B	161	172	anti-parallel
Strand 4	B	259	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XOY