Analysis of interatomic Contacts of Structural Units in PDB entry:
5XP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XP8 entry

There are 4 chains in PDB entry 5XP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2VAL 685
E
 T 1 T 17
F
 C 4 G 18
C
 A 19 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5XP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
102 123Right-handed alpha
Helix 5
AA5
A
178 184Right-handed alpha
Helix 6
AA6
A
222 230Right-handed alpha
Helix 7
AA7
A
266 270Right-handed 310
Helix 8
AA8
A
282 301Right-handed alpha
Helix 9
AA9
A
329 331Right-handed 310
Helix 10
AB1
A
332 337Right-handed alpha
Helix 11
AB2
A
358 372Right-handed alpha
Helix 12
AB3
A
384 387Right-handed 310
Helix 13
AB4
A
388 401Right-handed alpha
Helix 14
AB5
A
414 428Right-handed alpha
Helix 15
AB6
A
443 458Right-handed alpha
Helix 16
AB7
A
515 535Right-handed alpha
Helix 17
AB8
A
554 564Right-handed alpha
Helix 18
AB9
A
627 639Right-handed alpha
Helix 19
AC1
A
653 670Right-handed alpha
Helix 20
AC2
A
673 677Right-handed 310
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There are 6 sheets in PDB entry 5XP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 142anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
162 174anti-parallel
Strand 5
A
5 18anti-parallel
Strand 6
A
307 315anti-parallel
Strand 7
A
592 595anti-parallel
Strand 8
A
600 604anti-parallel
Strand 9
A
617 624anti-parallel
Strand 10
A
567 574anti-parallel
Strand 11
A
540 546parallel
Strand 12
A
473 480parallel
Strand 13
A
486 494anti-parallel
Strand 14
A
500 509anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 142anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
162 174anti-parallel
Strand 5
A
5 18anti-parallel
Strand 6
A
581 583anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
85 95anti-parallel
Strand 5
A
76 80anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
192 195anti-parallel
Strand 5
A
261 264anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
464 465anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 381first strand
Strand 2
A
344 350parallel
Strand 3
A
405 409parallel
Strand 4
A
432 434parallel
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