Analysis of interatomic Contacts of Structural Units in PDB entry:
5XPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XPD entry

There is 1 chain in PDB entry 5XPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6VAL 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5XPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 25Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
45 66Right-handed alpha
Helix 4
AA4
A
67 69Right-handed 310
Helix 5
AA5
A
70 93Right-handed alpha
Helix 6
AA6
A
95 109Right-handed alpha
Helix 7
AA7
A
111 125Right-handed alpha
Helix 8
AA8
A
126 145Right-handed alpha
Helix 9
AA9
A
146 160Right-handed alpha
Helix 10
AB1
A
166 187Right-handed alpha
Helix 11
AB2
A
189 214Right-handed alpha
Helix 12
AB3
A
219 223Right-handed 310
Helix 13
AB4
A
241 245Right-handed 310
Helix 14
AB5
A
251 255Right-handed 310
Helix 15
AB6
A
267 269Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5XPD.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
271 273anti-parallel
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