Analysis of interatomic Contacts of Structural Units in PDB entry:
5XPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XPJ entry

There are 2 chains in PDB entry 5XPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24ARG 417
B
 ASN 24ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5XPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 53Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
92 100Right-handed alpha
Helix 4
AA4
A
106 113Right-handed alpha
Helix 5
AA5
A
114 119Right-handed alpha
Helix 6
AA6
A
120 127Right-handed alpha
Helix 7
AA7
A
149 157Right-handed alpha
Helix 8
AA8
A
163 177Right-handed alpha
Helix 9
AA9
A
187 213Right-handed alpha
Helix 10
AB1
A
216 221Right-handed alpha
Helix 11
AB2
A
222 237Right-handed alpha
Helix 12
AB3
A
247 257Right-handed alpha
Helix 13
AB4
A
266 268Right-handed 310
Helix 14
AB5
A
269 276Right-handed alpha
Helix 15
AB6
A
310 325Right-handed alpha
Helix 16
AB7
A
326 335Right-handed alpha
Helix 17
AB8
A
347 351Right-handed 310
Helix 18
AB9
A
352 367Right-handed alpha
Helix 19
AC1
A
374 379Right-handed alpha
Helix 20
AC2
A
380 396Right-handed alpha
Helix 21
AC3
A
401 417Right-handed alpha
Helix 22
AC4
B
36 53Right-handed alpha
Helix 23
AC5
B
70 72Right-handed 310
Helix 24
AC6
B
73 79Right-handed alpha
Helix 25
AC7
B
92 100Right-handed alpha
Helix 26
AC8
B
106 113Right-handed alpha
Helix 27
AC9
B
114 119Right-handed alpha
Helix 28
AD1
B
120 127Right-handed alpha
Helix 29
AD2
B
149 157Right-handed alpha
Helix 30
AD3
B
163 177Right-handed alpha
Helix 31
AD4
B
187 213Right-handed alpha
Helix 32
AD5
B
216 221Right-handed alpha
Helix 33
AD6
B
222 237Right-handed alpha
Helix 34
AD7
B
247 257Right-handed alpha
Helix 35
AD8
B
266 268Right-handed 310
Helix 36
AD9
B
269 276Right-handed alpha
Helix 37
AE1
B
310 324Right-handed alpha
Helix 38
AE2
B
326 335Right-handed alpha
Helix 39
AE3
B
347 351Right-handed 310
Helix 40
AE4
B
352 368Right-handed alpha
Helix 41
AE5
B
380 396Right-handed alpha
Helix 42
AE6
B
401 417Right-handed alpha
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There are 8 sheets in PDB entry 5XPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
27 31parallel
Strand 3
A
86 88parallel
Strand 4
A
302 305anti-parallel
Strand 5
A
135 137anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
132 133anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
296 299anti-parallel
Strand 3
A
371 373parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
260 264parallel
Strand 3
A
145 148anti-parallel
Strand 4
A
285 288anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
27 31parallel
Strand 3
B
86 88parallel
Strand 4
B
302 305anti-parallel
Strand 5
B
135 137anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
132 133anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
296 299anti-parallel
Strand 3
B
371 373parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 182first strand
Strand 2
B
260 264parallel
Strand 3
B
145 148anti-parallel
Strand 4
B
285 288anti-parallel
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