Analysis of interatomic Contacts of Structural Units in PDB entry:
5XPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XPY entry

There is 1 chain in PDB entry 5XPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12TRP 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5XPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 53Right-handed alpha
Helix 2
AA2
A
118 130Right-handed alpha
Helix 3
AA3
A
134 136Right-handed 310
Helix 4
AA4
A
219 223Right-handed 310
Helix 5
AA5
A
229 237Right-handed alpha
Helix 6
AA6
A
241 249Right-handed alpha
Helix 7
AA7
A
250 252Right-handed 310
Helix 8
AA8
A
258 263Right-handed 310
Helix 9
AA9
A
287 304Right-handed alpha
Helix 10
AB1
A
310 330Right-handed alpha
Helix 11
AB2
A
342 346Right-handed 310
Helix 12
AB3
A
517 521Right-handed 310
Helix 13
AB4
A
523 530Right-handed alpha
Helix 14
AB5
A
531 544Right-handed alpha
Helix 15
AB6
A
550 564Right-handed alpha
Helix 16
AB7
A
639 657Right-handed alpha
Helix 17
AB8
A
668 678Right-handed alpha
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There are 3 sheets in PDB entry 5XPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
89 94parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
70 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
269 274parallel
Strand 4
A
138 142anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 608first strand
Strand 2
A
592 596anti-parallel
Strand 3
A
584 588anti-parallel
Strand 4
A
571 577anti-parallel
Strand 5
A
633 637anti-parallel
Strand 6
A
623 628anti-parallel
Strand 7
A
612 618anti-parallel
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