Analysis of interatomic Contacts of Structural Units in PDB entry:
5XPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XPZ entry

There are 2 chains in PDB entry 5XPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 18SER 677
B
 LEU 20ALA 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5XPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 53Right-handed alpha
Helix 2
AA2
A
66 69Right-handed 310
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
134 136Right-handed 310
Helix 5
AA5
A
229 237Right-handed alpha
Helix 6
AA6
A
241 249Right-handed alpha
Helix 7
AA7
A
250 252Right-handed 310
Helix 8
AA8
A
259 263Right-handed 310
Helix 9
AA9
A
287 304Right-handed alpha
Helix 10
AB1
A
310 333Right-handed alpha
Helix 11
AB2
A
517 521Right-handed 310
Helix 12
AB3
A
525 530Right-handed alpha
Helix 13
AB4
A
531 563Right-handed alpha
Helix 14
AB5
A
639 658Right-handed alpha
Helix 15
AB6
A
668 677Right-handed alpha
Helix 16
AB7
B
40 51Right-handed alpha
Helix 17
AB8
B
118 130Right-handed alpha
Helix 18
AB9
B
134 136Right-handed 310
Helix 19
AC1
B
229 237Right-handed alpha
Helix 20
AC2
B
241 249Right-handed alpha
Helix 21
AC3
B
250 252Right-handed 310
Helix 22
AC4
B
259 263Right-handed 310
Helix 23
AC5
B
287 304Right-handed alpha
Helix 24
AC6
B
310 333Right-handed alpha
Helix 25
AC7
B
517 522Right-handed 310
Helix 26
AC8
B
523 527Right-handed 310
Helix 27
AC9
B
531 564Right-handed alpha
Helix 28
AD1
B
639 656Right-handed alpha
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There are 6 sheets in PDB entry 5XPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
89 94parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
70 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
269 274parallel
Strand 4
A
138 141anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 608first strand
Strand 2
A
592 596anti-parallel
Strand 3
A
584 588anti-parallel
Strand 4
A
571 577anti-parallel
Strand 5
A
633 637anti-parallel
Strand 6
A
623 628anti-parallel
Strand 7
A
612 618anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
21 24anti-parallel
Strand 3
B
89 94parallel
Strand 4
B
61 65anti-parallel
Strand 5
B
70 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 114first strand
Strand 2
B
96 102anti-parallel
Strand 3
B
268 274parallel
Strand 4
B
138 141anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
603 608first strand
Strand 2
B
592 596anti-parallel
Strand 3
B
584 588anti-parallel
Strand 4
B
571 577anti-parallel
Strand 5
B
633 637anti-parallel
Strand 6
B
623 628anti-parallel
Strand 7
B
612 618anti-parallel
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