Analysis of interatomic Contacts of Structural Units in PDB entry:
5XQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XQ1 entry

There are 2 chains in PDB entry 5XQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 18GLY 786
B
 LEU 20GLY 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5XQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 53Right-handed alpha
Helix 2
AA2
A
78 83Right-handed alpha
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
134 136Right-handed 310
Helix 5
AA5
A
218 223Right-handed alpha
Helix 6
AA6
A
229 237Right-handed alpha
Helix 7
AA7
A
241 249Right-handed alpha
Helix 8
AA8
A
250 252Right-handed 310
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
287 304Right-handed alpha
Helix 11
AB2
A
310 331Right-handed alpha
Helix 12
AB3
A
517 521Right-handed 310
Helix 13
AB4
A
524 530Right-handed alpha
Helix 14
AB5
A
531 564Right-handed alpha
Helix 15
AB6
A
641 658Right-handed alpha
Helix 16
AB7
A
668 676Right-handed alpha
Helix 17
AB8
B
40 53Right-handed alpha
Helix 18
AB9
B
78 83Right-handed alpha
Helix 19
AC1
B
118 130Right-handed alpha
Helix 20
AC2
B
134 136Right-handed 310
Helix 21
AC3
B
218 222Right-handed 310
Helix 22
AC4
B
229 237Right-handed alpha
Helix 23
AC5
B
241 249Right-handed alpha
Helix 24
AC6
B
250 252Right-handed 310
Helix 25
AC7
B
259 263Right-handed 310
Helix 26
AC8
B
287 304Right-handed alpha
Helix 27
AC9
B
310 331Right-handed alpha
Helix 28
AD1
B
517 521Right-handed 310
Helix 29
AD2
B
524 530Right-handed alpha
Helix 30
AD3
B
531 565Right-handed alpha
Helix 31
AD4
B
639 658Right-handed alpha
Helix 32
AD5
B
669 675Right-handed alpha
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There are 6 sheets in PDB entry 5XQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
89 94parallel
Strand 4
A
61 65anti-parallel
Strand 5
A
70 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
269 274parallel
Strand 4
A
138 142anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 608first strand
Strand 2
A
592 596anti-parallel
Strand 3
A
584 588anti-parallel
Strand 4
A
571 577anti-parallel
Strand 5
A
633 637anti-parallel
Strand 6
A
623 628anti-parallel
Strand 7
A
612 618anti-parallel
Strand 8
A
777 780anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
21 24anti-parallel
Strand 3
B
89 94parallel
Strand 4
B
61 65anti-parallel
Strand 5
B
70 71anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 114first strand
Strand 2
B
96 102anti-parallel
Strand 3
B
269 274parallel
Strand 4
B
138 142anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
603 608first strand
Strand 2
B
592 597anti-parallel
Strand 3
B
584 588anti-parallel
Strand 4
B
571 577anti-parallel
Strand 5
B
633 637anti-parallel
Strand 6
B
623 628anti-parallel
Strand 7
B
612 618anti-parallel
Strand 8
B
777 780anti-parallel
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