Analysis of interatomic Contacts of Structural Units in PDB entry:
5XRW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XRW entry

There are 4 chains in PDB entry 5XRW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 44ASN 122
B
 SER 44ASN 122
C
 LEU 209LYS 286
D
 PRO 208LYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5XRW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed alpha
Helix 2
AA2
A
111 121Right-handed alpha
Helix 3
AA3
B
59 63Right-handed alpha
Helix 4
AA4
B
111 121Right-handed alpha
Helix 5
AA5
C
224 231Right-handed alpha
Helix 6
AA6
C
277 285Right-handed alpha
Helix 7
AA7
D
224 230Right-handed alpha
Helix 8
AA8
D
277 285Right-handed alpha
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There are 2 sheets in PDB entry 5XRW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
C
267 275anti-parallel
Strand 3
C
254 264anti-parallel
Strand 4
C
247 251anti-parallel
Strand 5
C
211 223anti-parallel
Strand 6
A
46 58anti-parallel
Strand 7
A
81 85anti-parallel
Strand 8
A
88 98anti-parallel
Strand 9
A
101 109anti-parallel
Strand 10
C
236 242anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 76first strand
Strand 2
D
267 275anti-parallel
Strand 3
D
254 264anti-parallel
Strand 4
D
247 251anti-parallel
Strand 5
D
211 223anti-parallel
Strand 6
B
46 58anti-parallel
Strand 7
B
81 85anti-parallel
Strand 8
B
88 98anti-parallel
Strand 9
B
101 109anti-parallel
Strand 10
D
236 242anti-parallel
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