Analysis of interatomic Contacts of Structural Units in PDB entry:
5XSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XSS entry

There are 4 chains in PDB entry 5XSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 LYS 14ASP 289
A
 PRO 12VAL 290
B
 PRO 12SER 288
C
 LYS 14ASP 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5XSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
26 44Right-handed alpha
Helix 2
AA2
X
56 70Right-handed alpha
Helix 3
AA3
X
85 95Right-handed alpha
Helix 4
AA4
X
118 135Right-handed alpha
Helix 5
AA5
X
149 167Right-handed alpha
Helix 6
AA6
X
180 195Right-handed alpha
Helix 7
AA7
X
205 219Right-handed alpha
Helix 8
AA8
X
233 242Right-handed alpha
Helix 9
AA9
X
252 269Right-handed alpha
Helix 10
AB1
A
26 44Right-handed alpha
Helix 11
AB2
A
56 70Right-handed alpha
Helix 12
AB3
A
85 95Right-handed alpha
Helix 13
AB4
A
118 135Right-handed alpha
Helix 14
AB5
A
149 167Right-handed alpha
Helix 15
AB6
A
180 194Right-handed alpha
Helix 16
AB7
A
207 219Right-handed alpha
Helix 17
AB8
A
233 243Right-handed alpha
Helix 18
AB9
A
252 269Right-handed alpha
Helix 19
AC1
A
288 290Right-handed 310
Helix 20
AC2
B
26 44Right-handed alpha
Helix 21
AC3
B
56 70Right-handed alpha
Helix 22
AC4
B
85 95Right-handed alpha
Helix 23
AC5
B
118 135Right-handed alpha
Helix 24
AC6
B
149 167Right-handed alpha
Helix 25
AC7
B
180 195Right-handed alpha
Helix 26
AC8
B
207 219Right-handed alpha
Helix 27
AC9
B
233 242Right-handed alpha
Helix 28
AD1
B
252 270Right-handed alpha
Helix 29
AD2
C
26 44Right-handed alpha
Helix 30
AD3
C
56 70Right-handed alpha
Helix 31
AD4
C
85 95Right-handed alpha
Helix 32
AD5
C
118 135Right-handed alpha
Helix 33
AD6
C
149 167Right-handed alpha
Helix 34
AD7
C
180 194Right-handed alpha
Helix 35
AD8
C
207 219Right-handed alpha
Helix 36
AD9
C
233 243Right-handed alpha
Helix 37
AE1
C
252 269Right-handed alpha
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There are 8 sheets in PDB entry 5XSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
46 50first strand
Strand 2
X
16 20parallel
Strand 3
X
74 77parallel
Strand 4
X
99 102parallel
Strand 5
X
113 115parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
170 176first strand
Strand 2
X
139 144parallel
Strand 3
X
200 203parallel
Strand 4
X
226 230parallel
Strand 5
X
247 250parallel
Strand 6
X
283 285anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
16 20parallel
Strand 3
A
74 78parallel
Strand 4
A
99 102parallel
Strand 5
A
113 115parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 176first strand
Strand 2
A
139 144parallel
Strand 3
A
200 203parallel
Strand 4
A
226 230parallel
Strand 5
A
247 250parallel
Strand 6
A
283 286anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
16 20parallel
Strand 3
B
74 77parallel
Strand 4
B
99 102parallel
Strand 5
B
113 115parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 176first strand
Strand 2
B
139 144parallel
Strand 3
B
200 203parallel
Strand 4
B
226 230parallel
Strand 5
B
247 250parallel
Strand 6
B
283 285anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
16 20parallel
Strand 3
C
74 77parallel
Strand 4
C
99 102parallel
Strand 5
C
113 115parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 176first strand
Strand 2
C
139 144parallel
Strand 3
C
200 203parallel
Strand 4
C
226 230parallel
Strand 5
C
247 250parallel
Strand 6
C
283 285anti-parallel
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