Analysis of interatomic Contacts of Structural Units in PDB entry:
5XSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XSV entry

There are 4 chains in PDB entry 5XSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 320	PRO 805
B	ALA 321	PRO 805
C	ALA 321	PRO 805
D	MET 320	PRO 805

There are 68 helices in PDB entry 5XSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	389	392	Right-handed 310
Helix 2	AA2	A	454	459	Right-handed alpha
Helix 3	AA3	A	504	519	Right-handed alpha
Helix 4	AA4	A	521	534	Right-handed alpha
Helix 5	AA5	A	572	583	Right-handed alpha
Helix 6	AA6	A	592	598	Right-handed alpha
Helix 7	AA7	A	606	630	Right-handed alpha
Helix 8	AA8	A	631	641	Right-handed alpha
Helix 9	AA9	A	645	657	Right-handed alpha
Helix 10	AB1	A	658	666	Right-handed alpha
Helix 11	AB2	A	671	678	Right-handed alpha
Helix 12	AB3	A	680	685	Right-handed alpha
Helix 13	AB4	A	692	707	Right-handed alpha
Helix 14	AB5	A	717	732	Right-handed alpha
Helix 15	AB6	A	739	757	Right-handed alpha
Helix 16	AB7	A	768	781	Right-handed alpha
Helix 17	AB8	A	793	802	Right-handed alpha
Helix 18	AB9	B	389	392	Right-handed 310
Helix 19	AC1	B	454	459	Right-handed alpha
Helix 20	AC2	B	504	519	Right-handed alpha
Helix 21	AC3	B	521	534	Right-handed alpha
Helix 22	AC4	B	572	583	Right-handed alpha
Helix 23	AC5	B	592	598	Right-handed alpha
Helix 24	AC6	B	606	630	Right-handed alpha
Helix 25	AC7	B	631	641	Right-handed alpha
Helix 26	AC8	B	645	657	Right-handed alpha
Helix 27	AC9	B	658	666	Right-handed alpha
Helix 28	AD1	B	671	678	Right-handed alpha
Helix 29	AD2	B	680	685	Right-handed alpha
Helix 30	AD3	B	692	707	Right-handed alpha
Helix 31	AD4	B	717	732	Right-handed alpha
Helix 32	AD5	B	739	757	Right-handed alpha
Helix 33	AD6	B	768	781	Right-handed alpha
Helix 34	AD7	B	793	802	Right-handed alpha
Helix 35	AD8	C	389	392	Right-handed 310
Helix 36	AD9	C	454	459	Right-handed alpha
Helix 37	AE1	C	504	519	Right-handed alpha
Helix 38	AE2	C	521	534	Right-handed alpha
Helix 39	AE3	C	572	583	Right-handed alpha
Helix 40	AE4	C	592	598	Right-handed alpha
Helix 41	AE5	C	606	630	Right-handed alpha
Helix 42	AE6	C	631	641	Right-handed alpha
Helix 43	AE7	C	645	657	Right-handed alpha
Helix 44	AE8	C	658	666	Right-handed alpha
Helix 45	AE9	C	671	678	Right-handed alpha
Helix 46	AF1	C	680	685	Right-handed alpha
Helix 47	AF2	C	692	707	Right-handed alpha
Helix 48	AF3	C	717	732	Right-handed alpha
Helix 49	AF4	C	739	757	Right-handed alpha
Helix 50	AF5	C	768	781	Right-handed alpha
Helix 51	AF6	C	793	802	Right-handed alpha
Helix 52	AF7	D	389	392	Right-handed 310
Helix 53	AF8	D	454	459	Right-handed alpha
Helix 54	AF9	D	504	519	Right-handed alpha
Helix 55	AG1	D	521	534	Right-handed alpha
Helix 56	AG2	D	572	583	Right-handed alpha
Helix 57	AG3	D	592	598	Right-handed alpha
Helix 58	AG4	D	606	630	Right-handed alpha
Helix 59	AG5	D	631	641	Right-handed alpha
Helix 60	AG6	D	645	657	Right-handed alpha
Helix 61	AG7	D	658	666	Right-handed alpha
Helix 62	AG8	D	671	678	Right-handed alpha
Helix 63	AG9	D	680	685	Right-handed alpha
Helix 64	AH1	D	692	707	Right-handed alpha
Helix 65	AH2	D	717	732	Right-handed alpha
Helix 66	AH3	D	739	757	Right-handed alpha
Helix 67	AH4	D	768	781	Right-handed alpha
Helix 68	AH5	D	793	802	Right-handed alpha

There are 24 sheets in PDB entry 5XSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	328	first strand
Strand 2	A	331	339	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	364	370	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	384	388	anti-parallel
Strand 3	A	352	360	anti-parallel
Strand 4	A	394	395	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	384	388	anti-parallel
Strand 3	A	352	360	anti-parallel
Strand 4	A	417	423	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	498	500	anti-parallel
Strand 3	A	537	538	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	550	first strand
Strand 2	A	555	558	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	716	first strand
Strand 2	A	766	767	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	328	first strand
Strand 2	B	331	339	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	364	370	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	352	360	anti-parallel
Strand 4	B	394	395	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	352	360	anti-parallel
Strand 4	B	417	423	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	498	500	anti-parallel
Strand 3	B	537	538	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	550	first strand
Strand 2	B	555	558	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	716	first strand
Strand 2	B	766	767	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	328	first strand
Strand 2	C	331	339	anti-parallel
Strand 3	C	400	408	anti-parallel
Strand 4	C	364	370	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	381	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	C	352	360	anti-parallel
Strand 4	C	394	395	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	381	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	C	352	360	anti-parallel
Strand 4	C	417	423	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	488	first strand
Strand 2	C	498	500	anti-parallel
Strand 3	C	537	538	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	547	550	first strand
Strand 2	C	555	558	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	716	first strand
Strand 2	C	766	767	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	328	first strand
Strand 2	D	331	339	anti-parallel
Strand 3	D	400	408	anti-parallel
Strand 4	D	364	370	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	381	first strand
Strand 2	D	384	388	anti-parallel
Strand 3	D	352	360	anti-parallel
Strand 4	D	394	395	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	381	first strand
Strand 2	D	384	388	anti-parallel
Strand 3	D	352	360	anti-parallel
Strand 4	D	417	423	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	488	first strand
Strand 2	D	498	500	anti-parallel
Strand 3	D	537	538	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	550	first strand
Strand 2	D	555	558	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	716	first strand
Strand 2	D	766	767	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XSV