Analysis of interatomic Contacts of Structural Units in PDB entry:
5XSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XSW entry

There are 2 chains in PDB entry 5XSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 321	PRO 805
B	ALA 321	PRO 805

There are 41 helices in PDB entry 5XSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	389	392	Right-handed 310
Helix 2	AA2	A	447	451	Right-handed 310
Helix 3	AA3	A	454	459	Right-handed alpha
Helix 4	AA4	A	491	495	Right-handed 310
Helix 5	AA5	A	504	519	Right-handed alpha
Helix 6	AA6	A	521	534	Right-handed alpha
Helix 7	AA7	A	572	583	Right-handed alpha
Helix 8	AA8	A	592	598	Right-handed alpha
Helix 9	AA9	A	606	631	Right-handed alpha
Helix 10	AB1	A	632	641	Right-handed alpha
Helix 11	AB2	A	645	658	Right-handed alpha
Helix 12	AB3	A	658	666	Right-handed alpha
Helix 13	AB4	A	671	677	Right-handed alpha
Helix 14	AB5	A	680	685	Right-handed alpha
Helix 15	AB6	A	689	691	Right-handed 310
Helix 16	AB7	A	692	706	Right-handed alpha
Helix 17	AB8	A	717	732	Right-handed alpha
Helix 18	AB9	A	739	759	Right-handed alpha
Helix 19	AC1	A	760	762	Right-handed 310
Helix 20	AC2	A	768	781	Right-handed alpha
Helix 21	AC3	A	793	802	Right-handed alpha
Helix 22	AC4	B	389	392	Right-handed 310
Helix 23	AC5	B	447	451	Right-handed 310
Helix 24	AC6	B	454	459	Right-handed alpha
Helix 25	AC7	B	504	519	Right-handed alpha
Helix 26	AC8	B	521	534	Right-handed alpha
Helix 27	AC9	B	572	583	Right-handed alpha
Helix 28	AD1	B	592	598	Right-handed alpha
Helix 29	AD2	B	606	631	Right-handed alpha
Helix 30	AD3	B	632	641	Right-handed alpha
Helix 31	AD4	B	645	658	Right-handed alpha
Helix 32	AD5	B	658	666	Right-handed alpha
Helix 33	AD6	B	671	677	Right-handed alpha
Helix 34	AD7	B	680	686	Right-handed alpha
Helix 35	AD8	B	689	691	Right-handed 310
Helix 36	AD9	B	692	706	Right-handed alpha
Helix 37	AE1	B	717	732	Right-handed alpha
Helix 38	AE2	B	739	759	Right-handed alpha
Helix 39	AE3	B	760	762	Right-handed 310
Helix 40	AE4	B	768	781	Right-handed alpha
Helix 41	AE5	B	793	802	Right-handed alpha

There are 12 sheets in PDB entry 5XSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	328	first strand
Strand 2	A	331	340	anti-parallel
Strand 3	A	399	408	anti-parallel
Strand 4	A	364	370	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	384	388	anti-parallel
Strand 3	A	351	360	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	384	388	anti-parallel
Strand 3	A	351	360	anti-parallel
Strand 4	A	417	423	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	498	500	anti-parallel
Strand 3	A	537	538	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	551	first strand
Strand 2	A	554	558	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	716	first strand
Strand 2	A	766	767	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	328	first strand
Strand 2	B	331	340	anti-parallel
Strand 3	B	399	408	anti-parallel
Strand 4	B	364	370	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	351	360	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	381	first strand
Strand 2	B	384	388	anti-parallel
Strand 3	B	351	360	anti-parallel
Strand 4	B	417	423	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	498	500	anti-parallel
Strand 3	B	537	538	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	551	first strand
Strand 2	B	554	558	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	716	first strand
Strand 2	B	766	767	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XSW