Analysis of interatomic Contacts of Structural Units in PDB entry:
5XTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XTP entry

There are 4 chains in PDB entry 5XTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 258
B
 MET 1LEU 258
C
 SER 0LEU 258
D
 MET 1GLN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5XTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 25Right-handed alpha
Helix 2
AA2
A
31 48Right-handed alpha
Helix 3
AA3
A
58 72Right-handed alpha
Helix 4
AA4
A
77 92Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
105 126Right-handed alpha
Helix 7
AA7
A
133 148Right-handed alpha
Helix 8
AA8
A
155 166Right-handed alpha
Helix 9
AA9
A
166 185Right-handed alpha
Helix 10
AB1
A
194 203Right-handed alpha
Helix 11
AB2
A
215 237Right-handed alpha
Helix 12
AB3
A
248 257Right-handed alpha
Helix 13
AB4
B
5 25Right-handed alpha
Helix 14
AB5
B
26 29Right-handed 310
Helix 15
AB6
B
31 49Right-handed alpha
Helix 16
AB7
B
59 72Right-handed alpha
Helix 17
AB8
B
77 92Right-handed alpha
Helix 18
AB9
B
94 98Right-handed 310
Helix 19
AC1
B
105 126Right-handed alpha
Helix 20
AC2
B
133 148Right-handed alpha
Helix 21
AC3
B
155 166Right-handed alpha
Helix 22
AC4
B
166 185Right-handed alpha
Helix 23
AC5
B
194 202Right-handed alpha
Helix 24
AC6
B
215 237Right-handed alpha
Helix 25
AC7
B
248 257Right-handed alpha
Helix 26
AC8
C
5 29Right-handed alpha
Helix 27
AC9
C
31 48Right-handed alpha
Helix 28
AD1
C
56 72Right-handed alpha
Helix 29
AD2
C
77 92Right-handed alpha
Helix 30
AD3
C
94 98Right-handed 310
Helix 31
AD4
C
105 126Right-handed alpha
Helix 32
AD5
C
128 130Right-handed 310
Helix 33
AD6
C
131 146Right-handed alpha
Helix 34
AD7
C
155 166Right-handed alpha
Helix 35
AD8
C
166 185Right-handed alpha
Helix 36
AD9
C
194 202Right-handed alpha
Helix 37
AE1
C
215 237Right-handed alpha
Helix 38
AE2
C
248 257Right-handed alpha
Helix 39
AE3
D
5 29Right-handed alpha
Helix 40
AE4
D
31 48Right-handed alpha
Helix 41
AE5
D
56 72Right-handed alpha
Helix 42
AE6
D
77 92Right-handed alpha
Helix 43
AE7
D
94 98Right-handed 310
Helix 44
AE8
D
105 127Right-handed alpha
Helix 45
AE9
D
128 130Right-handed 310
Helix 46
AF1
D
131 146Right-handed alpha
Helix 47
AF2
D
155 166Right-handed alpha
Helix 48
AF3
D
166 185Right-handed alpha
Helix 49
AF4
D
194 203Right-handed alpha
Helix 50
AF5
D
215 237Right-handed alpha
Helix 51
AF6
D
248 257Right-handed alpha
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There are 4 sheets in PDB entry 5XTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
211 213parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
211 213parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
211 213parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 192first strand
Strand 2
D
211 213parallel
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