Analysis of interatomic Contacts of Structural Units in PDB entry:
5XU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XU6 entry

There are 4 chains in PDB entry 5XU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	ARG 415
B	THR 19	THR 414
C	PRO 13	ARG 415
D	PRO 13	ARG 415

There are 85 helices in PDB entry 5XU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	61	77	Right-handed alpha
Helix 3	AA3	A	78	83	Right-handed alpha
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	97	107	Right-handed alpha
Helix 6	AA6	A	161	165	Right-handed 310
Helix 7	AA7	A	167	177	Right-handed alpha
Helix 8	AA8	A	178	187	Right-handed alpha
Helix 9	AA9	A	196	201	Right-handed alpha
Helix 10	AB1	A	204	222	Right-handed alpha
Helix 11	AB2	A	239	245	Right-handed alpha
Helix 12	AB3	A	251	270	Right-handed alpha
Helix 13	AB4	A	271	283	Right-handed alpha
Helix 14	AB5	A	286	299	Right-handed alpha
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	314	328	Right-handed alpha
Helix 17	AB8	A	329	334	Right-handed 310
Helix 18	AB9	A	339	356	Right-handed alpha
Helix 19	AC1	A	390	392	Right-handed 310
Helix 20	AC2	A	393	412	Right-handed alpha
Helix 21	AC3	B	20	22	Right-handed 310
Helix 22	AC4	B	70	77	Right-handed alpha
Helix 23	AC5	B	78	83	Right-handed alpha
Helix 24	AC6	B	84	88	Right-handed 310
Helix 25	AC7	B	98	104	Right-handed alpha
Helix 26	AC8	B	161	165	Right-handed 310
Helix 27	AC9	B	167	175	Right-handed alpha
Helix 28	AD1	B	178	187	Right-handed alpha
Helix 29	AD2	B	196	201	Right-handed alpha
Helix 30	AD3	B	204	222	Right-handed alpha
Helix 31	AD4	B	239	245	Right-handed alpha
Helix 32	AD5	B	251	270	Right-handed alpha
Helix 33	AD6	B	271	283	Right-handed alpha
Helix 34	AD7	B	287	299	Right-handed alpha
Helix 35	AD8	B	306	310	Right-handed 310
Helix 36	AD9	B	314	328	Right-handed alpha
Helix 37	AE1	B	329	334	Right-handed 310
Helix 38	AE2	B	339	355	Right-handed alpha
Helix 39	AE3	B	390	392	Right-handed 310
Helix 40	AE4	B	393	412	Right-handed alpha
Helix 41	AE5	C	14	19	Right-handed alpha
Helix 42	AE6	C	20	22	Right-handed 310
Helix 43	AE7	C	66	69	Right-handed 310
Helix 44	AE8	C	70	77	Right-handed alpha
Helix 45	AE9	C	78	83	Right-handed alpha
Helix 46	AF1	C	84	88	Right-handed 310
Helix 47	AF2	C	97	106	Right-handed alpha
Helix 48	AF3	C	107	111	Right-handed 310
Helix 49	AF4	C	161	165	Right-handed 310
Helix 50	AF5	C	167	177	Right-handed alpha
Helix 51	AF6	C	178	187	Right-handed alpha
Helix 52	AF7	C	196	201	Right-handed alpha
Helix 53	AF8	C	204	222	Right-handed alpha
Helix 54	AF9	C	239	245	Right-handed alpha
Helix 55	AG1	C	251	270	Right-handed alpha
Helix 56	AG2	C	271	284	Right-handed alpha
Helix 57	AG3	C	286	299	Right-handed alpha
Helix 58	AG4	C	306	310	Right-handed 310
Helix 59	AG5	C	314	328	Right-handed alpha
Helix 60	AG6	C	329	334	Right-handed 310
Helix 61	AG7	C	339	356	Right-handed alpha
Helix 62	AG8	C	390	392	Right-handed 310
Helix 63	AG9	C	393	412	Right-handed alpha
Helix 64	AH1	D	14	19	Right-handed alpha
Helix 65	AH2	D	20	22	Right-handed 310
Helix 66	AH3	D	42	46	Right-handed 310
Helix 67	AH4	D	70	77	Right-handed alpha
Helix 68	AH5	D	78	83	Right-handed alpha
Helix 69	AH6	D	84	88	Right-handed 310
Helix 70	AH7	D	97	107	Right-handed alpha
Helix 71	AH8	D	161	165	Right-handed 310
Helix 72	AH9	D	167	177	Right-handed alpha
Helix 73	AI1	D	178	187	Right-handed alpha
Helix 74	AI2	D	196	201	Right-handed alpha
Helix 75	AI3	D	204	222	Right-handed alpha
Helix 76	AI4	D	239	245	Right-handed alpha
Helix 77	AI5	D	251	270	Right-handed alpha
Helix 78	AI6	D	271	283	Right-handed alpha
Helix 79	AI7	D	287	299	Right-handed alpha
Helix 80	AI8	D	306	310	Right-handed 310
Helix 81	AI9	D	314	328	Right-handed alpha
Helix 82	AJ1	D	329	334	Right-handed 310
Helix 83	AJ2	D	339	355	Right-handed alpha
Helix 84	AJ3	D	390	392	Right-handed 310
Helix 85	AJ4	D	393	412	Right-handed alpha

There are 11 sheets in PDB entry 5XU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	48	52	anti-parallel
Strand 4	A	129	134	anti-parallel
Strand 5	A	92	95	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	229	233	anti-parallel
Strand 3	A	146	152	anti-parallel
Strand 4	A	357	365	anti-parallel
Strand 5	A	373	384	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	48	52	anti-parallel
Strand 4	B	130	134	anti-parallel
Strand 5	B	92	94	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	229	233	anti-parallel
Strand 3	B	146	152	anti-parallel
Strand 4	B	357	366	anti-parallel
Strand 5	B	372	375	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	229	233	anti-parallel
Strand 3	B	146	152	anti-parallel
Strand 4	B	357	366	anti-parallel
Strand 5	B	381	384	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	34	38	anti-parallel
Strand 3	C	48	52	anti-parallel
Strand 4	C	128	134	anti-parallel
Strand 5	C	91	96	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	229	233	anti-parallel
Strand 3	C	146	152	anti-parallel
Strand 4	C	357	366	anti-parallel
Strand 5	C	372	375	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	229	233	anti-parallel
Strand 3	C	146	152	anti-parallel
Strand 4	C	357	366	anti-parallel
Strand 5	C	381	384	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	30	first strand
Strand 2	D	33	38	anti-parallel
Strand 3	D	48	53	anti-parallel
Strand 4	D	129	134	anti-parallel
Strand 5	D	91	95	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	229	233	anti-parallel
Strand 3	D	146	152	anti-parallel
Strand 4	D	357	367	anti-parallel
Strand 5	D	371	375	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	229	233	anti-parallel
Strand 3	D	146	152	anti-parallel
Strand 4	D	357	367	anti-parallel
Strand 5	D	381	384	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XU6