Analysis of interatomic Contacts of Structural Units in PDB entry:
5XUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XUP entry

There are 4 chains in PDB entry 5XUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 65SER 266
B
 GLY 65GLU 265
C
 LYS 644LEU 655
D
 ILE 645ARG 650
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5XUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 93Right-handed alpha
Helix 2
AA2
A
94 111Right-handed alpha
Helix 3
AA3
A
116 134Right-handed alpha
Helix 4
AA4
A
149 159Right-handed alpha
Helix 5
AA5
A
165 187Right-handed alpha
Helix 6
AA6
A
189 201Right-handed alpha
Helix 7
AA7
A
210 221Right-handed alpha
Helix 8
AA8
A
226 231Right-handed alpha
Helix 9
AA9
A
232 252Right-handed alpha
Helix 10
AB1
A
254 265Right-handed alpha
Helix 11
AB2
B
66 93Right-handed alpha
Helix 12
AB3
B
94 112Right-handed alpha
Helix 13
AB4
B
116 134Right-handed alpha
Helix 14
AB5
B
149 161Right-handed alpha
Helix 15
AB6
B
166 186Right-handed alpha
Helix 16
AB7
B
189 201Right-handed alpha
Helix 17
AB8
B
210 221Right-handed alpha
Helix 18
AB9
B
225 231Right-handed alpha
Helix 19
AC1
B
232 251Right-handed alpha
Helix 20
AC2
B
254 265Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5XUP.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
C
650 651anti-parallel
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