Analysis of interatomic Contacts of Structural Units in PDB entry:
5XV4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XV4 entry

There are 7 chains in PDB entry 5XV4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	ARG 190
B	MET 1	THR 207
C	ASN 6	ARG 190
D	MET 1	THR 207
E	SER 7	ARG 190
F	MET 1	THR 207
G	SER 7	ARG 153

There are 83 helices in PDB entry 5XV4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	32	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	58	70	Right-handed alpha
Helix 4	AA4	A	115	132	Right-handed alpha
Helix 5	AA5	A	135	143	Right-handed alpha
Helix 6	AA6	A	161	165	Right-handed 310
Helix 7	AA7	B	16	32	Right-handed alpha
Helix 8	AA8	B	69	89	Right-handed alpha
Helix 9	AA9	B	133	162	Right-handed alpha
Helix 10	AB1	B	172	177	Right-handed 310
Helix 11	AB2	C	7	32	Right-handed alpha
Helix 12	AB3	C	49	53	Right-handed 310
Helix 13	AB4	C	58	70	Right-handed alpha
Helix 14	AB5	C	115	132	Right-handed alpha
Helix 15	AB6	C	135	143	Right-handed alpha
Helix 16	AB7	C	161	165	Right-handed 310
Helix 17	AB8	D	13	15	Right-handed 310
Helix 18	AB9	D	16	32	Right-handed alpha
Helix 19	AC1	D	69	89	Right-handed alpha
Helix 20	AC2	D	133	162	Right-handed alpha
Helix 21	AC3	D	171	177	Right-handed 310
Helix 22	AC4	E	8	32	Right-handed alpha
Helix 23	AC5	E	49	53	Right-handed 310
Helix 24	AC6	E	58	70	Right-handed alpha
Helix 25	AC7	E	115	132	Right-handed alpha
Helix 26	AC8	E	135	143	Right-handed alpha
Helix 27	AC9	E	161	165	Right-handed 310
Helix 28	AD1	F	16	32	Right-handed alpha
Helix 29	AD2	F	69	89	Right-handed alpha
Helix 30	AD3	F	133	159	Right-handed alpha
Helix 31	AD4	F	171	177	Right-handed 310
Helix 32	AD5	G	8	32	Right-handed alpha
Helix 33	AD6	G	49	53	Right-handed 310
Helix 34	AD7	G	58	70	Right-handed alpha
Helix 35	AD8	G	115	132	Right-handed alpha
Helix 36	AD9	G	135	143	Right-handed alpha
Helix 37	AE1	G	161	165	Right-handed 310
Helix 38	AE2	H	16	32	Right-handed alpha
Helix 39	AE3	H	69	89	Right-handed alpha
Helix 40	AE4	H	133	159	Right-handed alpha
Helix 41	AE5	H	172	177	Right-handed 310
Helix 42	AE6	H	205	210	Right-handed alpha
Helix 43	AE7	I	8	32	Right-handed alpha
Helix 44	AE8	I	49	53	Right-handed 310
Helix 45	AE9	I	58	70	Right-handed alpha
Helix 46	AF1	I	115	132	Right-handed alpha
Helix 47	AF2	I	135	143	Right-handed alpha
Helix 48	AF3	I	161	165	Right-handed 310
Helix 49	AF4	J	16	32	Right-handed alpha
Helix 50	AF5	J	69	89	Right-handed alpha
Helix 51	AF6	J	133	162	Right-handed alpha
Helix 52	AF7	J	171	177	Right-handed 310
Helix 53	AF8	K	8	32	Right-handed alpha
Helix 54	AF9	K	49	53	Right-handed 310
Helix 55	AG1	K	58	70	Right-handed alpha
Helix 56	AG2	K	115	132	Right-handed alpha
Helix 57	AG3	K	135	143	Right-handed alpha
Helix 58	AG4	K	161	165	Right-handed 310
Helix 59	AG5	L	16	32	Right-handed alpha
Helix 60	AG6	L	69	89	Right-handed alpha
Helix 61	AG7	L	133	159	Right-handed alpha
Helix 62	AG8	L	171	177	Right-handed 310
Helix 63	AG9	M	7	32	Right-handed alpha
Helix 64	AH1	M	49	53	Right-handed 310
Helix 65	AH2	M	58	70	Right-handed alpha
Helix 66	AH3	M	115	132	Right-handed alpha
Helix 67	AH4	M	135	143	Right-handed alpha
Helix 68	AH5	M	161	165	Right-handed 310
Helix 69	AH6	N	16	32	Right-handed alpha
Helix 70	AH7	N	69	89	Right-handed alpha
Helix 71	AH8	N	133	159	Right-handed alpha
Helix 72	AH9	N	172	177	Right-handed 310
Helix 73	AI1	N	205	210	Right-handed alpha
Helix 74	AI2	O	8	32	Right-handed alpha
Helix 75	AI3	O	49	53	Right-handed 310
Helix 76	AI4	O	58	70	Right-handed alpha
Helix 77	AI5	O	115	132	Right-handed alpha
Helix 78	AI6	O	135	143	Right-handed alpha
Helix 79	AI7	O	161	165	Right-handed 310
Helix 80	AI8	P	16	32	Right-handed alpha
Helix 81	AI9	P	69	89	Right-handed alpha
Helix 82	AJ1	P	133	162	Right-handed alpha
Helix 83	AJ2	P	171	177	Right-handed 310

There are 40 sheets in PDB entry 5XV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	178	first strand
Strand 2	A	181	189	anti-parallel
Strand 3	A	94	103	anti-parallel
Strand 4	A	79	87	anti-parallel
Strand 5	A	149	157	anti-parallel
Strand 6	H	202	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	12	first strand
Strand 2	B	115	128	parallel
Strand 3	B	95	106	anti-parallel
Strand 4	B	190	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	186	187	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	45	47	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	63	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	178	first strand
Strand 2	C	181	189	anti-parallel
Strand 3	C	94	103	anti-parallel
Strand 4	C	79	87	anti-parallel
Strand 5	C	149	157	anti-parallel
Strand 6	F	202	203	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	12	first strand
Strand 2	D	115	128	parallel
Strand 3	D	95	106	anti-parallel
Strand 4	D	190	196	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	186	187	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	45	47	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	63	67	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	157	first strand
Strand 2	E	79	87	anti-parallel
Strand 3	E	94	103	anti-parallel
Strand 4	E	181	189	anti-parallel
Strand 5	E	169	178	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	13	first strand
Strand 2	F	115	129	parallel
Strand 3	F	95	106	anti-parallel
Strand 4	F	190	196	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	186	187	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	45	47	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	63	67	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	157	first strand
Strand 2	G	79	87	anti-parallel
Strand 3	G	93	103	anti-parallel
Strand 4	G	181	189	anti-parallel
Strand 5	G	169	178	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	12	first strand
Strand 2	H	115	128	parallel
Strand 3	H	95	106	anti-parallel
Strand 4	H	190	196	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	186	187	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	39	first strand
Strand 2	H	45	47	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	56	first strand
Strand 2	H	63	67	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	157	first strand
Strand 2	I	79	87	anti-parallel
Strand 3	I	94	103	anti-parallel
Strand 4	I	181	189	anti-parallel
Strand 5	I	169	178	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	12	first strand
Strand 2	J	115	128	parallel
Strand 3	J	95	106	anti-parallel
Strand 4	J	190	196	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	186	187	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	39	first strand
Strand 2	J	45	47	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	56	first strand
Strand 2	J	63	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	202	203	first strand
Strand 2	O	149	157	anti-parallel
Strand 3	O	79	87	anti-parallel
Strand 4	O	93	103	anti-parallel
Strand 5	O	181	189	anti-parallel
Strand 6	O	169	178	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	157	first strand
Strand 2	K	79	87	anti-parallel
Strand 3	K	93	103	anti-parallel
Strand 4	K	181	189	anti-parallel
Strand 5	K	169	178	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	13	first strand
Strand 2	L	115	129	parallel
Strand 3	L	95	106	anti-parallel
Strand 4	L	190	196	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	34	first strand
Strand 2	L	186	187	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	37	39	first strand
Strand 2	L	45	47	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	56	first strand
Strand 2	L	63	67	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	202	203	first strand
Strand 2	M	149	157	anti-parallel
Strand 3	M	79	87	anti-parallel
Strand 4	M	94	103	anti-parallel
Strand 5	M	181	189	anti-parallel
Strand 6	M	169	178	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	13	first strand
Strand 2	N	115	129	parallel
Strand 3	N	95	106	anti-parallel
Strand 4	N	190	196	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	34	first strand
Strand 2	N	186	187	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	37	39	first strand
Strand 2	N	45	47	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	52	56	first strand
Strand 2	N	63	67	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5	12	first strand
Strand 2	P	115	128	parallel
Strand 3	P	95	106	anti-parallel
Strand 4	P	190	196	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	33	34	first strand
Strand 2	P	186	187	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	37	39	first strand
Strand 2	P	45	47	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	52	56	first strand
Strand 2	P	63	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XV4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XV4