Analysis of interatomic Contacts of Structural Units in PDB entry:
5XV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XV5 entry

There are 6 chains in PDB entry 5XV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3ASN 228
B
 MET 1LYS 224
C
 ARG 3LYS 224
D
 SER 0GLY 225
E
 ARG 3LYS 224
F
 MET 1LYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5XV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
51 58Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
137 148Right-handed alpha
Helix 7
AA7
A
158 168Right-handed alpha
Helix 8
AA8
B
30 44Right-handed alpha
Helix 9
AA9
B
51 58Right-handed alpha
Helix 10
AB1
B
65 75Right-handed alpha
Helix 11
AB2
B
96 101Right-handed alpha
Helix 12
AB3
B
115 124Right-handed alpha
Helix 13
AB4
B
137 148Right-handed alpha
Helix 14
AB5
B
158 168Right-handed alpha
Helix 15
AB6
C
30 44Right-handed alpha
Helix 16
AB7
C
51 58Right-handed alpha
Helix 17
AB8
C
65 75Right-handed alpha
Helix 18
AB9
C
96 101Right-handed alpha
Helix 19
AC1
C
115 124Right-handed alpha
Helix 20
AC2
C
137 148Right-handed alpha
Helix 21
AC3
C
158 168Right-handed alpha
Helix 22
AC4
D
30 44Right-handed alpha
Helix 23
AC5
D
51 58Right-handed alpha
Helix 24
AC6
D
65 75Right-handed alpha
Helix 25
AC7
D
96 101Right-handed alpha
Helix 26
AC8
D
115 124Right-handed alpha
Helix 27
AC9
D
137 148Right-handed alpha
Helix 28
AD1
D
158 168Right-handed alpha
Helix 29
AD2
E
30 44Right-handed alpha
Helix 30
AD3
E
51 58Right-handed alpha
Helix 31
AD4
E
65 75Right-handed alpha
Helix 32
AD5
E
96 101Right-handed alpha
Helix 33
AD6
E
115 124Right-handed alpha
Helix 34
AD7
E
137 148Right-handed alpha
Helix 35
AD8
E
158 168Right-handed alpha
Helix 36
AD9
F
30 44Right-handed alpha
Helix 37
AE1
F
51 58Right-handed alpha
Helix 38
AE2
F
65 75Right-handed alpha
Helix 39
AE3
F
96 101Right-handed alpha
Helix 40
AE4
F
115 124Right-handed alpha
Helix 41
AE5
F
137 148Right-handed alpha
Helix 42
AE6
F
158 168Right-handed alpha
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There are 6 sheets in PDB entry 5XV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
106 110parallel
Strand 3
A
82 86parallel
Strand 4
A
46 50parallel
Strand 5
A
152 155parallel
Strand 6
A
5 12parallel
Strand 7
A
173 178parallel
Strand 8
A
216 226anti-parallel
Strand 9
A
203 213anti-parallel
Strand 10
B
181 182anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
B
203 213anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
173 178anti-parallel
Strand 5
B
5 12parallel
Strand 6
B
152 155parallel
Strand 7
B
46 50parallel
Strand 8
B
82 86parallel
Strand 9
B
106 110parallel
Strand 10
B
127 130parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 130first strand
Strand 2
C
106 110parallel
Strand 3
C
82 86parallel
Strand 4
C
46 50parallel
Strand 5
C
152 155parallel
Strand 6
C
5 12parallel
Strand 7
C
173 178parallel
Strand 8
C
216 223anti-parallel
Strand 9
C
203 213anti-parallel
Strand 10
D
181 182anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 182first strand
Strand 2
D
203 213anti-parallel
Strand 3
D
216 223anti-parallel
Strand 4
D
173 178anti-parallel
Strand 5
D
5 12parallel
Strand 6
D
152 155parallel
Strand 7
D
46 50parallel
Strand 8
D
82 86parallel
Strand 9
D
106 110parallel
Strand 10
D
127 130parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 131first strand
Strand 2
E
106 111parallel
Strand 3
E
82 86parallel
Strand 4
E
46 50parallel
Strand 5
E
152 155parallel
Strand 6
E
5 12parallel
Strand 7
E
173 178parallel
Strand 8
E
216 223anti-parallel
Strand 9
E
203 213anti-parallel
Strand 10
F
181 182anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 182first strand
Strand 2
F
203 213anti-parallel
Strand 3
F
216 226anti-parallel
Strand 4
F
173 178anti-parallel
Strand 5
F
5 12parallel
Strand 6
F
152 155parallel
Strand 7
F
46 50parallel
Strand 8
F
82 86parallel
Strand 9
F
106 110parallel
Strand 10
F
127 130parallel
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