Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XVN entry

There are 16 chains in PDB entry 5XVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 288
B	MET 1	ILE 288
C	MET 1	ILE 288
D	MET 1	ILE 288
E	TYR 5	GLU 108
F	MET 1	GLU 108
G	T 2	T 26
H	T 2	T 25
I	MET 1	ILE 288
J	MET 1	ILE 288
K	MET 1	ILE 288
L	MET 1	ILE 288
M	MET 1	GLU 108
N	TYR 5	GLU 108
O	T 2	C 27
P	T 2	T 25

There are103 helices in PDB entry 5XVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	60	Right-handed alpha
Helix 2	AA2	A	86	95	Right-handed alpha
Helix 3	AA3	A	97	123	Right-handed alpha
Helix 4	AA4	A	125	138	Right-handed alpha
Helix 5	AA5	A	146	161	Right-handed alpha
Helix 6	AA6	A	170	194	Right-handed alpha
Helix 7	AA7	A	211	218	Right-handed alpha
Helix 8	AA8	A	221	232	Right-handed alpha
Helix 9	AA9	A	236	244	Right-handed alpha
Helix 10	AB1	A	245	250	Right-handed alpha
Helix 11	AB2	A	261	278	Right-handed alpha
Helix 12	AB3	B	51	60	Right-handed alpha
Helix 13	AB4	B	86	95	Right-handed alpha
Helix 14	AB5	B	97	123	Right-handed alpha
Helix 15	AB6	B	125	138	Right-handed alpha
Helix 16	AB7	B	146	161	Right-handed alpha
Helix 17	AB8	B	170	195	Right-handed alpha
Helix 18	AB9	B	211	218	Right-handed alpha
Helix 19	AC1	B	221	232	Right-handed alpha
Helix 20	AC2	B	236	244	Right-handed alpha
Helix 21	AC3	B	245	250	Right-handed alpha
Helix 22	AC4	B	261	278	Right-handed alpha
Helix 23	AC5	C	51	60	Right-handed alpha
Helix 24	AC6	C	86	95	Right-handed alpha
Helix 25	AC7	C	97	123	Right-handed alpha
Helix 26	AC8	C	125	138	Right-handed alpha
Helix 27	AC9	C	146	161	Right-handed alpha
Helix 28	AD1	C	170	194	Right-handed alpha
Helix 29	AD2	C	211	218	Right-handed alpha
Helix 30	AD3	C	221	232	Right-handed alpha
Helix 31	AD4	C	236	244	Right-handed alpha
Helix 32	AD5	C	245	250	Right-handed alpha
Helix 33	AD6	C	261	278	Right-handed alpha
Helix 34	AD7	D	51	60	Right-handed alpha
Helix 35	AD8	D	86	95	Right-handed alpha
Helix 36	AD9	D	97	123	Right-handed alpha
Helix 37	AE1	D	125	138	Right-handed alpha
Helix 38	AE2	D	170	194	Right-handed alpha
Helix 39	AE3	D	211	218	Right-handed alpha
Helix 40	AE4	D	221	232	Right-handed alpha
Helix 41	AE5	D	236	244	Right-handed alpha
Helix 42	AE6	D	245	250	Right-handed alpha
Helix 43	AE7	D	261	278	Right-handed alpha
Helix 44	AE8	E	18	35	Right-handed alpha
Helix 45	AE9	E	51	65	Right-handed alpha
Helix 46	AF1	E	79	84	Right-handed alpha
Helix 47	AF2	E	95	99	Right-handed 310
Helix 48	AF3	F	18	35	Right-handed alpha
Helix 49	AF4	F	51	65	Right-handed alpha
Helix 50	AF5	F	78	84	Right-handed alpha
Helix 51	AF6	F	95	99	Right-handed 310
Helix 52	AF7	I	51	60	Right-handed alpha
Helix 53	AF8	I	86	95	Right-handed alpha
Helix 54	AF9	I	97	123	Right-handed alpha
Helix 55	AG1	I	125	138	Right-handed alpha
Helix 56	AG2	I	146	161	Right-handed alpha
Helix 57	AG3	I	170	194	Right-handed alpha
Helix 58	AG4	I	211	218	Right-handed alpha
Helix 59	AG5	I	221	232	Right-handed alpha
Helix 60	AG6	I	236	244	Right-handed alpha
Helix 61	AG7	I	245	250	Right-handed alpha
Helix 62	AG8	I	261	278	Right-handed alpha
Helix 63	AG9	J	51	60	Right-handed alpha
Helix 64	AH1	J	87	95	Right-handed alpha
Helix 65	AH2	J	97	123	Right-handed alpha
Helix 66	AH3	J	125	138	Right-handed alpha
Helix 67	AH4	J	146	161	Right-handed alpha
Helix 68	AH5	J	170	194	Right-handed alpha
Helix 69	AH6	J	211	218	Right-handed alpha
Helix 70	AH7	J	221	232	Right-handed alpha
Helix 71	AH8	J	236	244	Right-handed alpha
Helix 72	AH9	J	245	250	Right-handed alpha
Helix 73	AI1	J	261	278	Right-handed alpha
Helix 74	AI2	K	51	60	Right-handed alpha
Helix 75	AI3	K	86	95	Right-handed alpha
Helix 76	AI4	K	97	123	Right-handed alpha
Helix 77	AI5	K	125	138	Right-handed alpha
Helix 78	AI6	K	146	161	Right-handed alpha
Helix 79	AI7	K	170	194	Right-handed alpha
Helix 80	AI8	K	211	218	Right-handed alpha
Helix 81	AI9	K	221	232	Right-handed alpha
Helix 82	AJ1	K	236	244	Right-handed alpha
Helix 83	AJ2	K	245	250	Right-handed alpha
Helix 84	AJ3	K	261	278	Right-handed alpha
Helix 85	AJ4	L	51	60	Right-handed alpha
Helix 86	AJ5	L	86	95	Right-handed alpha
Helix 87	AJ6	L	97	123	Right-handed alpha
Helix 88	AJ7	L	125	138	Right-handed alpha
Helix 89	AJ8	L	146	161	Right-handed alpha
Helix 90	AJ9	L	170	194	Right-handed alpha
Helix 91	AK1	L	211	218	Right-handed alpha
Helix 92	AK2	L	221	232	Right-handed alpha
Helix 93	AK3	L	236	244	Right-handed alpha
Helix 94	AK4	L	245	250	Right-handed alpha
Helix 95	AK5	L	261	278	Right-handed alpha
Helix 96	AK6	M	18	35	Right-handed alpha
Helix 97	AK7	M	51	65	Right-handed alpha
Helix 98	AK8	M	78	84	Right-handed alpha
Helix 99	AK9	M	95	99	Right-handed 310
Helix 100	AL1	N	18	35	Right-handed alpha
Helix 101	AL2	N	51	65	Right-handed alpha
Helix 102	AL3	N	79	84	Right-handed alpha
Helix 103	AL4	N	95	99	Right-handed 310

There are 20 sheets in PDB entry 5XVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	37	42	parallel
Strand 3	A	63	67	parallel
Strand 4	A	73	79	anti-parallel
Strand 5	B	73	79	anti-parallel
Strand 6	B	63	67	anti-parallel
Strand 7	B	37	42	parallel
Strand 8	B	4	8	parallel
Strand 9	E	103	106	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	20	25	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	A	47	50	parallel
Strand 5	B	47	50	anti-parallel
Strand 6	B	12	17	parallel
Strand 7	B	20	24	anti-parallel
Strand 8	B	29	33	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	257	260	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	254	first strand
Strand 2	B	257	260	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	37	42	parallel
Strand 3	C	63	67	parallel
Strand 4	C	73	79	anti-parallel
Strand 5	D	73	79	anti-parallel
Strand 6	D	63	67	anti-parallel
Strand 7	D	37	42	parallel
Strand 8	D	4	8	parallel
Strand 9	F	103	106	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	C	47	50	parallel
Strand 5	D	47	50	anti-parallel
Strand 6	D	12	17	parallel
Strand 7	D	20	24	anti-parallel
Strand 8	D	29	33	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	254	first strand
Strand 2	C	257	260	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	254	first strand
Strand 2	D	257	260	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	44	49	anti-parallel
Strand 3	E	6	13	anti-parallel
Strand 4	E	71	78	anti-parallel
Strand 5	F	86	89	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	F	71	77	anti-parallel
Strand 3	F	7	13	anti-parallel
Strand 4	F	44	48	anti-parallel
Strand 5	F	38	41	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	37	42	parallel
Strand 3	I	63	67	parallel
Strand 4	I	73	79	anti-parallel
Strand 5	J	73	79	anti-parallel
Strand 6	J	63	67	anti-parallel
Strand 7	J	37	42	parallel
Strand 8	J	4	8	parallel
Strand 9	M	103	106	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	33	first strand
Strand 2	I	20	24	anti-parallel
Strand 3	I	12	17	anti-parallel
Strand 4	I	47	50	parallel
Strand 5	J	47	50	anti-parallel
Strand 6	J	12	17	parallel
Strand 7	J	20	24	anti-parallel
Strand 8	J	29	33	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	251	254	first strand
Strand 2	I	257	260	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	251	254	first strand
Strand 2	J	257	260	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	8	first strand
Strand 2	K	37	42	parallel
Strand 3	K	63	67	parallel
Strand 4	K	73	79	anti-parallel
Strand 5	L	73	79	anti-parallel
Strand 6	L	63	67	anti-parallel
Strand 7	L	37	42	parallel
Strand 8	L	4	8	parallel
Strand 9	N	103	106	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	33	first strand
Strand 2	K	20	24	anti-parallel
Strand 3	K	12	17	anti-parallel
Strand 4	K	47	50	parallel
Strand 5	L	47	50	anti-parallel
Strand 6	L	12	17	parallel
Strand 7	L	20	24	anti-parallel
Strand 8	L	29	33	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	251	254	first strand
Strand 2	K	257	260	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	254	first strand
Strand 2	L	257	260	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	38	41	first strand
Strand 2	M	44	49	anti-parallel
Strand 3	M	6	13	anti-parallel
Strand 4	M	71	77	anti-parallel
Strand 5	N	86	89	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	86	89	first strand
Strand 2	N	71	78	anti-parallel
Strand 3	N	6	13	anti-parallel
Strand 4	N	44	49	anti-parallel
Strand 5	N	38	41	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVN