Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XVP entry

There are 5 chains in PDB entry 5XVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 286
B	MET 1	ILE 288
C	MET 1	ILE 288
D	MET 1	ILE 288
E	ARG 4	ILE 72

There are 52 helices in PDB entry 5XVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	60	Right-handed alpha
Helix 2	AA2	A	85	95	Right-handed alpha
Helix 3	AA3	A	97	123	Right-handed alpha
Helix 4	AA4	A	125	138	Right-handed alpha
Helix 5	AA5	A	146	160	Right-handed alpha
Helix 6	AA6	A	170	195	Right-handed alpha
Helix 7	AA7	A	211	219	Right-handed alpha
Helix 8	AA8	A	221	232	Right-handed alpha
Helix 9	AA9	A	236	245	Right-handed alpha
Helix 10	AB1	A	245	250	Right-handed alpha
Helix 11	AB2	A	261	277	Right-handed alpha
Helix 12	AB3	B	51	60	Right-handed alpha
Helix 13	AB4	B	85	95	Right-handed alpha
Helix 14	AB5	B	97	123	Right-handed alpha
Helix 15	AB6	B	125	138	Right-handed alpha
Helix 16	AB7	B	146	161	Right-handed alpha
Helix 17	AB8	B	170	195	Right-handed alpha
Helix 18	AB9	B	211	219	Right-handed alpha
Helix 19	AC1	B	221	232	Right-handed alpha
Helix 20	AC2	B	236	245	Right-handed alpha
Helix 21	AC3	B	245	250	Right-handed alpha
Helix 22	AC4	B	261	277	Right-handed alpha
Helix 23	AC5	C	51	60	Right-handed alpha
Helix 24	AC6	C	85	95	Right-handed alpha
Helix 25	AC7	C	97	123	Right-handed alpha
Helix 26	AC8	C	125	138	Right-handed alpha
Helix 27	AC9	C	146	160	Right-handed alpha
Helix 28	AD1	C	170	195	Right-handed alpha
Helix 29	AD2	C	211	219	Right-handed alpha
Helix 30	AD3	C	221	232	Right-handed alpha
Helix 31	AD4	C	236	245	Right-handed alpha
Helix 32	AD5	C	245	250	Right-handed alpha
Helix 33	AD6	C	261	277	Right-handed alpha
Helix 34	AD7	D	51	60	Right-handed alpha
Helix 35	AD8	D	85	95	Right-handed alpha
Helix 36	AD9	D	97	123	Right-handed alpha
Helix 37	AE1	D	125	138	Right-handed alpha
Helix 38	AE2	D	146	160	Right-handed alpha
Helix 39	AE3	D	170	195	Right-handed alpha
Helix 40	AE4	D	211	219	Right-handed alpha
Helix 41	AE5	D	221	232	Right-handed alpha
Helix 42	AE6	D	236	245	Right-handed alpha
Helix 43	AE7	D	245	250	Right-handed alpha
Helix 44	AE8	D	261	277	Right-handed alpha
Helix 45	AE9	E	18	35	Right-handed alpha
Helix 46	AF1	E	51	65	Right-handed alpha
Helix 47	AF2	E	79	85	Right-handed alpha
Helix 48	AF3	E	95	99	Right-handed 310
Helix 49	AF4	F	18	35	Right-handed alpha
Helix 50	AF5	F	51	65	Right-handed alpha
Helix 51	AF6	F	79	85	Right-handed alpha
Helix 52	AF7	F	95	99	Right-handed 310

There are 10 sheets in PDB entry 5XVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	37	42	parallel
Strand 3	B	63	67	parallel
Strand 4	B	73	79	anti-parallel
Strand 5	A	73	79	anti-parallel
Strand 6	A	63	67	anti-parallel
Strand 7	A	37	42	parallel
Strand 8	A	4	8	parallel
Strand 9	F	103	104	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	20	25	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	A	47	50	parallel
Strand 5	B	47	50	anti-parallel
Strand 6	B	12	17	parallel
Strand 7	B	20	24	anti-parallel
Strand 8	B	29	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	37	42	parallel
Strand 3	D	63	67	parallel
Strand 4	D	73	79	anti-parallel
Strand 5	C	73	79	anti-parallel
Strand 6	C	63	67	anti-parallel
Strand 7	C	37	42	parallel
Strand 8	C	4	8	parallel
Strand 9	E	103	106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	C	47	50	parallel
Strand 5	D	47	50	anti-parallel
Strand 6	D	12	17	parallel
Strand 7	D	20	24	anti-parallel
Strand 8	D	29	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	253	first strand
Strand 2	C	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	253	first strand
Strand 2	D	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	41	first strand
Strand 2	E	44	49	anti-parallel
Strand 3	E	6	13	anti-parallel
Strand 4	E	71	78	anti-parallel
Strand 5	F	86	89	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	6	13	anti-parallel
Strand 4	F	44	49	anti-parallel
Strand 5	F	38	41	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVP