Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XVU entry

There are 3 chains in PDB entry 5XVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 12ARG 332
B
 ILE 12ARG 332
C
 ILE 12ARG 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5XVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed alpha
Helix 2
AA2
A
30 33Right-handed 310
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
124 129Right-handed alpha
Helix 5
AA5
A
130 132Right-handed 310
Helix 6
AA6
A
133 154Right-handed alpha
Helix 7
AA7
A
162 164Right-handed 310
Helix 8
AA8
A
170 173Right-handed 310
Helix 9
AA9
A
198 202Right-handed 310
Helix 10
AB1
A
203 208Right-handed alpha
Helix 11
AB2
A
216 231Right-handed alpha
Helix 12
AB3
A
241 254Right-handed alpha
Helix 13
AB4
A
255 265Right-handed alpha
Helix 14
AB5
A
272 277Right-handed alpha
Helix 15
AB6
A
284 289Right-handed 310
Helix 16
AB7
A
298 309Right-handed alpha
Helix 17
AB8
A
312 316Right-handed 310
Helix 18
AB9
A
318 323Right-handed alpha
Helix 19
AC1
B
24 29Right-handed alpha
Helix 20
AC2
B
78 92Right-handed alpha
Helix 21
AC3
B
124 129Right-handed alpha
Helix 22
AC4
B
130 132Right-handed 310
Helix 23
AC5
B
133 154Right-handed alpha
Helix 24
AC6
B
162 164Right-handed 310
Helix 25
AC7
B
170 173Right-handed 310
Helix 26
AC8
B
198 202Right-handed 310
Helix 27
AC9
B
203 208Right-handed alpha
Helix 28
AD1
B
215 231Right-handed alpha
Helix 29
AD2
B
241 254Right-handed alpha
Helix 30
AD3
B
255 265Right-handed alpha
Helix 31
AD4
B
272 277Right-handed alpha
Helix 32
AD5
B
284 289Right-handed 310
Helix 33
AD6
B
298 309Right-handed alpha
Helix 34
AD7
B
312 316Right-handed 310
Helix 35
AD8
B
318 323Right-handed alpha
Helix 36
AD9
B
324 329Right-handed 310
Helix 37
AE1
C
19 23Right-handed 310
Helix 38
AE2
C
24 29Right-handed alpha
Helix 39
AE3
C
78 92Right-handed alpha
Helix 40
AE4
C
124 129Right-handed alpha
Helix 41
AE5
C
130 132Right-handed 310
Helix 42
AE6
C
133 154Right-handed alpha
Helix 43
AE7
C
162 164Right-handed 310
Helix 44
AE8
C
170 173Right-handed 310
Helix 45
AE9
C
198 202Right-handed 310
Helix 46
AF1
C
203 208Right-handed alpha
Helix 47
AF2
C
215 231Right-handed alpha
Helix 48
AF3
C
241 254Right-handed alpha
Helix 49
AF4
C
255 265Right-handed alpha
Helix 50
AF5
C
270 277Right-handed alpha
Helix 51
AF6
C
284 289Right-handed 310
Helix 52
AF7
C
298 309Right-handed alpha
Helix 53
AF8
C
312 316Right-handed 310
Helix 54
AF9
C
318 323Right-handed alpha
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There are 9 sheets in PDB entry 5XVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 51first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
101 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
184 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
174 177anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 51first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
113 118anti-parallel
Strand 5
B
101 106anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
174 177anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 51first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
67 74anti-parallel
Strand 4
C
113 118anti-parallel
Strand 5
C
101 106anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
184 185anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 169first strand
Strand 2
C
174 177anti-parallel
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