Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XVV entry

There are 6 chains in PDB entry 5XVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	TRP 460
B	SER 2	TRP 460
C	SER 2	TRP 460
D	ASN 3	TRP 460
E	ASN 3	TRP 460
F	LEU 4	TRP 460

There are114 helices in PDB entry 5XVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	23	Right-handed alpha
Helix 2	AA2	A	25	30	Right-handed alpha
Helix 3	AA3	A	32	41	Right-handed alpha
Helix 4	AA4	A	88	106	Right-handed alpha
Helix 5	AA5	A	125	141	Right-handed alpha
Helix 6	AA6	A	142	144	Right-handed 310
Helix 7	AA7	A	158	174	Right-handed alpha
Helix 8	AA8	A	184	188	Right-handed 310
Helix 9	AA9	A	195	213	Right-handed alpha
Helix 10	AB1	A	230	243	Right-handed alpha
Helix 11	AB2	A	266	279	Right-handed alpha
Helix 12	AB3	A	282	286	Right-handed 310
Helix 13	AB4	A	326	336	Right-handed alpha
Helix 14	AB5	A	350	364	Right-handed alpha
Helix 15	AB6	A	365	369	Right-handed 310
Helix 16	AB7	A	374	379	Right-handed alpha
Helix 17	AB8	A	380	396	Right-handed alpha
Helix 18	AB9	A	400	427	Right-handed alpha
Helix 19	AC1	A	436	456	Right-handed alpha
Helix 20	AC2	B	7	23	Right-handed alpha
Helix 21	AC3	B	25	30	Right-handed alpha
Helix 22	AC4	B	32	41	Right-handed alpha
Helix 23	AC5	B	88	106	Right-handed alpha
Helix 24	AC6	B	125	141	Right-handed alpha
Helix 25	AC7	B	142	144	Right-handed 310
Helix 26	AC8	B	158	174	Right-handed alpha
Helix 27	AC9	B	195	213	Right-handed alpha
Helix 28	AD1	B	230	243	Right-handed alpha
Helix 29	AD2	B	266	279	Right-handed alpha
Helix 30	AD3	B	283	287	Right-handed 310
Helix 31	AD4	B	306	310	Right-handed 310
Helix 32	AD5	B	326	336	Right-handed alpha
Helix 33	AD6	B	350	364	Right-handed alpha
Helix 34	AD7	B	365	369	Right-handed 310
Helix 35	AD8	B	374	379	Right-handed alpha
Helix 36	AD9	B	380	396	Right-handed alpha
Helix 37	AE1	B	400	427	Right-handed alpha
Helix 38	AE2	B	436	456	Right-handed alpha
Helix 39	AE3	C	7	23	Right-handed alpha
Helix 40	AE4	C	25	30	Right-handed alpha
Helix 41	AE5	C	32	41	Right-handed alpha
Helix 42	AE6	C	88	106	Right-handed alpha
Helix 43	AE7	C	125	141	Right-handed alpha
Helix 44	AE8	C	142	144	Right-handed 310
Helix 45	AE9	C	158	174	Right-handed alpha
Helix 46	AF1	C	184	188	Right-handed 310
Helix 47	AF2	C	195	213	Right-handed alpha
Helix 48	AF3	C	230	243	Right-handed alpha
Helix 49	AF4	C	266	279	Right-handed alpha
Helix 50	AF5	C	283	287	Right-handed 310
Helix 51	AF6	C	326	336	Right-handed alpha
Helix 52	AF7	C	350	363	Right-handed alpha
Helix 53	AF8	C	365	369	Right-handed 310
Helix 54	AF9	C	374	379	Right-handed alpha
Helix 55	AG1	C	380	396	Right-handed alpha
Helix 56	AG2	C	400	427	Right-handed alpha
Helix 57	AG3	C	436	456	Right-handed alpha
Helix 58	AG4	D	7	23	Right-handed alpha
Helix 59	AG5	D	25	30	Right-handed alpha
Helix 60	AG6	D	32	41	Right-handed alpha
Helix 61	AG7	D	88	106	Right-handed alpha
Helix 62	AG8	D	125	141	Right-handed alpha
Helix 63	AG9	D	142	144	Right-handed 310
Helix 64	AH1	D	158	174	Right-handed alpha
Helix 65	AH2	D	184	188	Right-handed 310
Helix 66	AH3	D	195	213	Right-handed alpha
Helix 67	AH4	D	230	243	Right-handed alpha
Helix 68	AH5	D	266	279	Right-handed alpha
Helix 69	AH6	D	282	287	Right-handed 310
Helix 70	AH7	D	326	336	Right-handed alpha
Helix 71	AH8	D	350	364	Right-handed alpha
Helix 72	AH9	D	365	369	Right-handed 310
Helix 73	AI1	D	374	379	Right-handed alpha
Helix 74	AI2	D	380	395	Right-handed alpha
Helix 75	AI3	D	400	427	Right-handed alpha
Helix 76	AI4	D	436	456	Right-handed alpha
Helix 77	AI5	E	7	23	Right-handed alpha
Helix 78	AI6	E	25	30	Right-handed alpha
Helix 79	AI7	E	32	41	Right-handed alpha
Helix 80	AI8	E	88	106	Right-handed alpha
Helix 81	AI9	E	125	141	Right-handed alpha
Helix 82	AJ1	E	142	144	Right-handed 310
Helix 83	AJ2	E	158	174	Right-handed alpha
Helix 84	AJ3	E	184	188	Right-handed 310
Helix 85	AJ4	E	195	213	Right-handed alpha
Helix 86	AJ5	E	230	243	Right-handed alpha
Helix 87	AJ6	E	266	279	Right-handed alpha
Helix 88	AJ7	E	282	286	Right-handed 310
Helix 89	AJ8	E	326	336	Right-handed alpha
Helix 90	AJ9	E	350	364	Right-handed alpha
Helix 91	AK1	E	365	369	Right-handed 310
Helix 92	AK2	E	374	379	Right-handed alpha
Helix 93	AK3	E	380	394	Right-handed alpha
Helix 94	AK4	E	400	427	Right-handed alpha
Helix 95	AK5	E	436	456	Right-handed alpha
Helix 96	AK6	F	7	23	Right-handed alpha
Helix 97	AK7	F	25	30	Right-handed alpha
Helix 98	AK8	F	32	41	Right-handed alpha
Helix 99	AK9	F	88	106	Right-handed alpha
Helix 100	AL1	F	125	141	Right-handed alpha
Helix 101	AL2	F	142	144	Right-handed 310
Helix 102	AL3	F	158	174	Right-handed alpha
Helix 103	AL4	F	184	188	Right-handed 310
Helix 104	AL5	F	195	213	Right-handed alpha
Helix 105	AL6	F	230	243	Right-handed alpha
Helix 106	AL7	F	266	279	Right-handed alpha
Helix 107	AL8	F	282	287	Right-handed 310
Helix 108	AL9	F	326	336	Right-handed alpha
Helix 109	AM1	F	350	364	Right-handed alpha
Helix 110	AM2	F	365	369	Right-handed 310
Helix 111	AM3	F	374	379	Right-handed alpha
Helix 112	AM4	F	380	395	Right-handed alpha
Helix 113	AM5	F	400	427	Right-handed alpha
Helix 114	AM6	F	436	456	Right-handed alpha

There are 12 sheets in PDB entry 5XVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	A	77	83	parallel
Strand 3	A	112	117	parallel
Strand 4	A	60	71	anti-parallel
Strand 5	A	45	54	anti-parallel
Strand 6	E	45	54	anti-parallel
Strand 7	E	60	71	anti-parallel
Strand 8	E	112	117	anti-parallel
Strand 9	E	81	83	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	302	first strand
Strand 2	A	255	259	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	223	226	parallel
Strand 5	A	315	317	parallel
Strand 6	A	340	342	parallel
Strand 7	A	371	373	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	77	83	parallel
Strand 3	B	112	117	parallel
Strand 4	B	60	71	anti-parallel
Strand 5	B	45	54	anti-parallel
Strand 6	F	45	54	anti-parallel
Strand 7	F	60	71	anti-parallel
Strand 8	F	112	117	anti-parallel
Strand 9	F	77	83	parallel
Strand 10	F	149	152	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	223	227	parallel
Strand 3	B	315	318	parallel
Strand 4	B	340	342	parallel
Strand 5	B	371	373	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	255	259	anti-parallel
Strand 3	B	298	302	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	112	117	parallel
Strand 3	C	60	71	anti-parallel
Strand 4	C	45	54	anti-parallel
Strand 5	D	45	54	anti-parallel
Strand 6	D	60	71	anti-parallel
Strand 7	D	112	117	anti-parallel
Strand 8	D	77	83	parallel
Strand 9	D	149	152	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	149	150	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	302	first strand
Strand 2	C	255	259	anti-parallel
Strand 3	C	246	252	anti-parallel
Strand 4	C	223	227	parallel
Strand 5	C	315	318	parallel
Strand 6	C	340	342	parallel
Strand 7	C	371	373	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	302	first strand
Strand 2	D	255	259	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	223	226	parallel
Strand 5	D	315	317	parallel
Strand 6	D	340	342	parallel
Strand 7	D	371	373	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	149	150	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	302	first strand
Strand 2	E	255	259	anti-parallel
Strand 3	E	246	252	anti-parallel
Strand 4	E	223	227	parallel
Strand 5	E	315	318	parallel
Strand 6	E	340	342	parallel
Strand 7	E	371	373	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	302	first strand
Strand 2	F	255	259	anti-parallel
Strand 3	F	246	252	anti-parallel
Strand 4	F	223	226	parallel
Strand 5	F	315	317	parallel
Strand 6	F	340	342	parallel
Strand 7	F	371	373	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVV