Analysis of interatomic Contacts of Structural Units in PDB entry:
5XW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XW6 entry

There are 3 chains in PDB entry 5XW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 27	ASN 346
A	SER 27	ASN 346
B	SER 27	ASN 346

There are 21 helices in PDB entry 5XW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	27	48	Right-handed alpha
Helix 2	AA2	C	76	81	Right-handed alpha
Helix 3	AA3	C	170	175	Right-handed 310
Helix 4	AA4	C	219	226	Right-handed alpha
Helix 5	AA5	C	229	234	Right-handed alpha
Helix 6	AA6	C	316	345	Right-handed alpha
Helix 7	AA7	A	28	48	Right-handed alpha
Helix 8	AA8	A	76	81	Right-handed alpha
Helix 9	AA9	A	119	123	Right-handed 310
Helix 10	AB1	A	170	175	Right-handed 310
Helix 11	AB2	A	219	226	Right-handed alpha
Helix 12	AB3	A	229	234	Right-handed alpha
Helix 13	AB4	A	270	274	Right-handed 310
Helix 14	AB5	A	316	346	Right-handed alpha
Helix 15	AB6	B	28	48	Right-handed alpha
Helix 16	AB7	B	76	81	Right-handed alpha
Helix 17	AB8	B	112	114	Right-handed 310
Helix 18	AB9	B	170	175	Right-handed 310
Helix 19	AC1	B	219	226	Right-handed alpha
Helix 20	AC2	B	229	234	Right-handed alpha
Helix 21	AC3	B	316	345	Right-handed alpha

There are 16 sheets in PDB entry 5XW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	292	315	anti-parallel
Strand 3	C	238	249	parallel
Strand 4	C	259	265	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	142	first strand
Strand 2	C	148	156	anti-parallel
Strand 3	C	89	108	anti-parallel
Strand 4	C	292	315	anti-parallel
Strand 5	C	278	286	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	177	186	anti-parallel
Strand 3	C	191	194	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	177	186	anti-parallel
Strand 3	C	216	218	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	56	first strand
Strand 2	A	292	315	anti-parallel
Strand 3	A	238	249	parallel
Strand 4	A	259	265	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	142	first strand
Strand 2	A	148	156	anti-parallel
Strand 3	A	89	108	anti-parallel
Strand 4	A	292	315	anti-parallel
Strand 5	A	278	286	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	177	186	anti-parallel
Strand 3	A	191	194	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	177	186	anti-parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	74	75	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	292	315	anti-parallel
Strand 3	B	278	286	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	148	156	anti-parallel
Strand 3	B	89	108	anti-parallel
Strand 4	B	292	315	anti-parallel
Strand 5	B	278	286	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	142	first strand
Strand 2	B	148	156	anti-parallel
Strand 3	B	89	108	anti-parallel
Strand 4	B	292	315	anti-parallel
Strand 5	B	238	249	parallel
Strand 6	B	259	265	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	177	186	anti-parallel
Strand 3	B	191	194	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	177	186	anti-parallel
Strand 3	B	216	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	74	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XW6