Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XWB entry

There are 2 chains in PDB entry 5XWB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	CYS 426
B	MET 1	CYS 426

There are 37 helices in PDB entry 5XWB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	35	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	95	108	Right-handed alpha
Helix 4	AA4	A	118	123	Right-handed alpha
Helix 5	AA5	A	126	136	Right-handed alpha
Helix 6	AA6	A	171	181	Right-handed alpha
Helix 7	AA7	A	182	184	Right-handed 310
Helix 8	AA8	A	198	212	Right-handed alpha
Helix 9	AA9	A	243	258	Right-handed alpha
Helix 10	AB1	A	272	275	Right-handed 310
Helix 11	AB2	A	276	285	Right-handed alpha
Helix 12	AB3	A	312	323	Right-handed alpha
Helix 13	AB4	A	335	341	Right-handed 310
Helix 14	AB5	A	344	356	Right-handed alpha
Helix 15	AB6	A	385	393	Right-handed alpha
Helix 16	AB7	A	394	398	Right-handed 310
Helix 17	AB8	A	407	411	Right-handed 310
Helix 18	AB9	A	416	424	Right-handed alpha
Helix 19	AC1	B	21	35	Right-handed alpha
Helix 20	AC2	B	47	60	Right-handed alpha
Helix 21	AC3	B	68	71	Right-handed 310
Helix 22	AC4	B	95	108	Right-handed alpha
Helix 23	AC5	B	118	123	Right-handed alpha
Helix 24	AC6	B	126	135	Right-handed alpha
Helix 25	AC7	B	172	181	Right-handed alpha
Helix 26	AC8	B	182	184	Right-handed 310
Helix 27	AC9	B	198	212	Right-handed alpha
Helix 28	AD1	B	243	257	Right-handed alpha
Helix 29	AD2	B	272	275	Right-handed 310
Helix 30	AD3	B	276	284	Right-handed alpha
Helix 31	AD4	B	312	323	Right-handed alpha
Helix 32	AD5	B	335	341	Right-handed 310
Helix 33	AD6	B	344	356	Right-handed alpha
Helix 34	AD7	B	385	394	Right-handed alpha
Helix 35	AD8	B	395	398	Right-handed 310
Helix 36	AD9	B	407	412	Right-handed 310
Helix 37	AE1	B	416	424	Right-handed alpha

There are 15 sheets in PDB entry 5XWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	402	405	anti-parallel
Strand 3	A	378	380	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	425	426	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	260	264	parallel
Strand 3	A	294	298	anti-parallel
Strand 4	A	287	290	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	72	76	anti-parallel
Strand 3	A	38	42	anti-parallel
Strand 4	A	237	239	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	112	116	parallel
Strand 3	A	151	154	anti-parallel
Strand 4	A	139	142	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	188	192	parallel
Strand 3	A	223	226	anti-parallel
Strand 4	A	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	326	327	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	330	333	parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	359	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	402	405	anti-parallel
Strand 3	B	379	380	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	290	first strand
Strand 2	B	294	298	anti-parallel
Strand 3	B	258	264	anti-parallel
Strand 4	B	11	17	parallel
Strand 5	B	425	426	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	72	76	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	237	239	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	112	116	parallel
Strand 3	B	151	154	anti-parallel
Strand 4	B	139	142	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	188	193	parallel
Strand 3	B	223	226	anti-parallel
Strand 4	B	217	219	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	326	327	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	330	333	parallel
Strand 3	B	366	370	anti-parallel
Strand 4	B	359	362	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XWB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWB