Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XWD entry

There are 3 chains in PDB entry 5XWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	THR 614
H	VAL 2	SER 120
D	SER 2	LEU 109

There are 25 helices in PDB entry 5XWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	139	143	Right-handed 310
Helix 5	AA5	A	148	152	Right-handed 310
Helix 6	AA6	A	170	174	Right-handed 310
Helix 7	AA7	A	179	183	Right-handed 310
Helix 8	AA8	A	203	207	Right-handed 310
Helix 9	AA9	A	220	224	Right-handed 310
Helix 10	AB1	A	318	322	Right-handed 310
Helix 11	AB2	A	331	336	Right-handed 310
Helix 12	AB3	A	349	354	Right-handed alpha
Helix 13	AB4	A	364	374	Right-handed 310
Helix 14	AB5	A	393	397	Right-handed 310
Helix 15	AB6	A	407	410	Right-handed 310
Helix 16	AB7	A	452	456	Right-handed 310
Helix 17	AB8	A	471	478	Right-handed alpha
Helix 18	AB9	A	495	499	Right-handed 310
Helix 19	AC1	A	551	555	Right-handed 310
Helix 20	AC2	A	578	580	Right-handed 310
Helix 21	AC3	A	607	612	Right-handed 310
Helix 22	AC4	H	63	66	Right-handed 310
Helix 23	AC5	H	88	92	Right-handed 310
Helix 24	AC6	D	27	31	Right-handed 310
Helix 25	AC7	D	79	83	Right-handed 310

There are 17 sheets in PDB entry 5XWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	36	37	parallel
Strand 3	A	60	61	parallel
Strand 4	A	82	83	parallel
Strand 5	A	118	119	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	65	68	parallel
Strand 3	A	93	98	parallel
Strand 4	A	123	127	parallel
Strand 5	A	153	154	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	230	232	anti-parallel
Strand 3	A	266	268	parallel
Strand 4	A	261	263	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	252	255	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	283	284	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	299	304	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	340	342	parallel
Strand 3	A	376	377	parallel
Strand 4	A	401	402	parallel
Strand 5	A	431	432	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	416	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	467	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	510	512	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	527	first strand
Strand 2	A	530	533	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	566	568	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	582	587	anti-parallel
Strand 3	A	593	595	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	93	101	anti-parallel
Strand 4	H	34	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	108	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	108	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	98	100	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWD