Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XWM entry

There are 4 chains in PDB entry 5XWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	PHE 358
B	GLU 1	GLU 365
C	ILE 2	PHE 358
D	SER 0	ALA 189

There are 66 helices in PDB entry 5XWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	29	50	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	99	112	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed alpha
Helix 6	AA6	A	143	157	Right-handed alpha
Helix 7	AA7	A	167	171	Right-handed alpha
Helix 8	AA8	A	200	213	Right-handed alpha
Helix 9	AA9	A	223	230	Right-handed alpha
Helix 10	AB1	A	243	258	Right-handed alpha
Helix 11	AB2	A	259	262	Right-handed 310
Helix 12	AB3	A	275	281	Right-handed alpha
Helix 13	AB4	A	285	289	Right-handed 310
Helix 14	AB5	A	305	311	Right-handed 310
Helix 15	AB6	A	313	324	Right-handed alpha
Helix 16	AB7	A	325	334	Right-handed alpha
Helix 17	AB8	B	9	17	Right-handed alpha
Helix 18	AB9	B	29	50	Right-handed alpha
Helix 19	AC1	B	66	73	Right-handed alpha
Helix 20	AC2	B	99	112	Right-handed alpha
Helix 21	AC3	B	121	126	Right-handed alpha
Helix 22	AC4	B	143	157	Right-handed alpha
Helix 23	AC5	B	167	171	Right-handed alpha
Helix 24	AC6	B	172	174	Right-handed 310
Helix 25	AC7	B	200	213	Right-handed alpha
Helix 26	AC8	B	223	229	Right-handed alpha
Helix 27	AC9	B	243	258	Right-handed alpha
Helix 28	AD1	B	259	262	Right-handed 310
Helix 29	AD2	B	275	282	Right-handed alpha
Helix 30	AD3	B	285	289	Right-handed 310
Helix 31	AD4	B	305	311	Right-handed 310
Helix 32	AD5	B	313	324	Right-handed alpha
Helix 33	AD6	B	325	334	Right-handed alpha
Helix 34	AD7	C	9	17	Right-handed alpha
Helix 35	AD8	C	29	50	Right-handed alpha
Helix 36	AD9	C	66	73	Right-handed alpha
Helix 37	AE1	C	99	111	Right-handed alpha
Helix 38	AE2	C	120	127	Right-handed 310
Helix 39	AE3	C	143	157	Right-handed alpha
Helix 40	AE4	C	167	171	Right-handed alpha
Helix 41	AE5	C	172	174	Right-handed 310
Helix 42	AE6	C	200	213	Right-handed alpha
Helix 43	AE7	C	223	229	Right-handed alpha
Helix 44	AE8	C	243	258	Right-handed alpha
Helix 45	AE9	C	259	262	Right-handed 310
Helix 46	AF1	C	275	281	Right-handed alpha
Helix 47	AF2	C	285	289	Right-handed 310
Helix 48	AF3	C	305	311	Right-handed 310
Helix 49	AF4	C	313	324	Right-handed alpha
Helix 50	AF5	C	325	334	Right-handed alpha
Helix 51	AF6	D	9	17	Right-handed alpha
Helix 52	AF7	D	29	50	Right-handed alpha
Helix 53	AF8	D	66	73	Right-handed alpha
Helix 54	AF9	D	99	111	Right-handed alpha
Helix 55	AG1	D	120	127	Right-handed 310
Helix 56	AG2	D	143	157	Right-handed alpha
Helix 57	AG3	D	167	171	Right-handed alpha
Helix 58	AG4	D	172	174	Right-handed 310
Helix 59	AG5	D	200	213	Right-handed alpha
Helix 60	AG6	D	223	230	Right-handed alpha
Helix 61	AG7	D	243	258	Right-handed alpha
Helix 62	AG8	D	275	281	Right-handed alpha
Helix 63	AG9	D	285	289	Right-handed 310
Helix 64	AH1	D	305	311	Right-handed 310
Helix 65	AH2	D	313	324	Right-handed alpha
Helix 66	AH3	D	325	333	Right-handed alpha

There are 12 sheets in PDB entry 5XWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	57	62	parallel
Strand 3	A	20	25	parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	88	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	161	166	parallel
Strand 3	A	133	138	parallel
Strand 4	A	179	183	anti-parallel
Strand 5	A	192	193	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	266	271	parallel
Strand 3	A	234	239	parallel
Strand 4	A	291	295	anti-parallel
Strand 5	A	300	302	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	57	62	parallel
Strand 3	B	20	25	parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	88	89	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	161	166	parallel
Strand 3	B	133	138	parallel
Strand 4	B	179	183	anti-parallel
Strand 5	B	192	193	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	266	271	parallel
Strand 3	B	234	239	parallel
Strand 4	B	291	295	anti-parallel
Strand 5	B	300	302	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	57	62	parallel
Strand 3	C	20	25	parallel
Strand 4	C	80	85	anti-parallel
Strand 5	C	88	89	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	161	166	parallel
Strand 3	C	133	138	parallel
Strand 4	C	179	183	anti-parallel
Strand 5	C	192	194	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	218	first strand
Strand 2	C	266	271	parallel
Strand 3	C	234	239	parallel
Strand 4	C	291	295	anti-parallel
Strand 5	C	300	302	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	57	62	parallel
Strand 3	D	20	25	parallel
Strand 4	D	80	85	anti-parallel
Strand 5	D	88	89	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	161	166	parallel
Strand 3	D	133	138	parallel
Strand 4	D	179	183	anti-parallel
Strand 5	D	192	193	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	266	271	parallel
Strand 3	D	234	239	parallel
Strand 4	D	291	295	anti-parallel
Strand 5	D	300	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWM