Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XWP entry

There are 6 chains in PDB entry 5XWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLU 1153
C	G 1	C 58
D	G 1	C 30
E	G 1	C 58
F	G 1	U 29
B	SER 0	GLU 1153

There are119 helices in PDB entry 5XWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	43	46	Right-handed 310
Helix 3	AA3	A	54	69	Right-handed alpha
Helix 4	AA4	A	106	108	Right-handed 310
Helix 5	AA5	A	109	118	Right-handed alpha
Helix 6	AA6	A	124	129	Right-handed 310
Helix 7	AA7	A	130	150	Right-handed alpha
Helix 8	AA8	A	170	179	Right-handed alpha
Helix 9	AA9	A	180	183	Right-handed 310
Helix 10	AB1	A	184	200	Right-handed alpha
Helix 11	AB2	A	201	214	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	232	240	Right-handed alpha
Helix 14	AB5	A	240	251	Right-handed alpha
Helix 15	AB6	A	253	261	Right-handed alpha
Helix 16	AB7	A	265	277	Right-handed alpha
Helix 17	AB8	A	284	308	Right-handed alpha
Helix 18	AB9	A	319	325	Right-handed alpha
Helix 19	AC1	A	325	355	Right-handed alpha
Helix 20	AC2	A	362	379	Right-handed alpha
Helix 21	AC3	A	379	394	Right-handed alpha
Helix 22	AC4	A	423	431	Right-handed alpha
Helix 23	AC5	A	433	445	Right-handed alpha
Helix 24	AC6	A	453	476	Right-handed alpha
Helix 25	AC7	A	483	487	Right-handed 310
Helix 26	AC8	A	496	507	Right-handed alpha
Helix 27	AC9	A	508	523	Right-handed alpha
Helix 28	AD1	A	530	539	Right-handed alpha
Helix 29	AD2	A	555	562	Right-handed alpha
Helix 30	AD3	A	562	570	Right-handed alpha
Helix 31	AD4	A	581	602	Right-handed alpha
Helix 32	AD5	A	602	609	Right-handed alpha
Helix 33	AD6	A	613	629	Right-handed alpha
Helix 34	AD7	A	650	666	Right-handed alpha
Helix 35	AD8	A	676	696	Right-handed alpha
Helix 36	AD9	A	698	704	Right-handed 310
Helix 37	AE1	A	707	715	Right-handed alpha
Helix 38	AE2	A	716	732	Right-handed alpha
Helix 39	AE3	A	737	747	Right-handed alpha
Helix 40	AE4	A	756	769	Right-handed alpha
Helix 41	AE5	A	770	788	Right-handed alpha
Helix 42	AE6	A	793	804	Right-handed alpha
Helix 43	AE7	A	817	823	Right-handed alpha
Helix 44	AE8	A	834	842	Right-handed alpha
Helix 45	AE9	A	856	866	Right-handed alpha
Helix 46	AF1	A	867	877	Right-handed alpha
Helix 47	AF2	A	884	895	Right-handed alpha
Helix 48	AF3	A	896	913	Right-handed alpha
Helix 49	AF4	A	921	946	Right-handed alpha
Helix 50	AF5	A	947	983	Right-handed alpha
Helix 51	AF6	A	986	994	Right-handed 310
Helix 52	AF7	A	996	1000	Right-handed 310
Helix 53	AF8	A	1007	1020	Right-handed alpha
Helix 54	AF9	A	1031	1042	Right-handed alpha
Helix 55	AG1	A	1045	1053	Right-handed alpha
Helix 56	AG2	A	1063	1075	Right-handed alpha
Helix 57	AG3	A	1078	1083	Right-handed alpha
Helix 58	AG4	A	1084	1097	Right-handed alpha
Helix 59	AG5	A	1137	1150	Right-handed alpha
Helix 60	AG6	B	29	37	Right-handed alpha
Helix 61	AG7	B	43	46	Right-handed 310
Helix 62	AG8	B	54	70	Right-handed alpha
Helix 63	AG9	B	109	119	Right-handed alpha
Helix 64	AH1	B	123	128	Right-handed alpha
Helix 65	AH2	B	130	151	Right-handed alpha
Helix 66	AH3	B	170	179	Right-handed alpha
Helix 67	AH4	B	180	183	Right-handed 310
Helix 68	AH5	B	184	200	Right-handed alpha
Helix 69	AH6	B	203	214	Right-handed alpha
Helix 70	AH7	B	219	231	Right-handed alpha
Helix 71	AH8	B	232	240	Right-handed alpha
Helix 72	AH9	B	240	251	Right-handed alpha
Helix 73	AI1	B	253	261	Right-handed alpha
Helix 74	AI2	B	265	277	Right-handed alpha
Helix 75	AI3	B	284	308	Right-handed alpha
Helix 76	AI4	B	325	355	Right-handed alpha
Helix 77	AI5	B	362	379	Right-handed alpha
Helix 78	AI6	B	379	394	Right-handed alpha
Helix 79	AI7	B	426	431	Right-handed alpha
Helix 80	AI8	B	433	445	Right-handed alpha
Helix 81	AI9	B	453	476	Right-handed alpha
Helix 82	AJ1	B	483	490	Right-handed 310
Helix 83	AJ2	B	496	507	Right-handed alpha
Helix 84	AJ3	B	508	523	Right-handed alpha
Helix 85	AJ4	B	530	541	Right-handed alpha
Helix 86	AJ5	B	555	560	Right-handed alpha
Helix 87	AJ6	B	562	571	Right-handed alpha
Helix 88	AJ7	B	581	602	Right-handed alpha
Helix 89	AJ8	B	602	610	Right-handed alpha
Helix 90	AJ9	B	614	631	Right-handed alpha
Helix 91	AK1	B	652	666	Right-handed alpha
Helix 92	AK2	B	676	695	Right-handed alpha
Helix 93	AK3	B	699	703	Right-handed 310
Helix 94	AK4	B	707	714	Right-handed alpha
Helix 95	AK5	B	716	732	Right-handed alpha
Helix 96	AK6	B	737	746	Right-handed alpha
Helix 97	AK7	B	756	767	Right-handed alpha
Helix 98	AK8	B	770	789	Right-handed alpha
Helix 99	AK9	B	793	804	Right-handed alpha
Helix 100	AL1	B	817	822	Right-handed alpha
Helix 101	AL2	B	834	842	Right-handed alpha
Helix 102	AL3	B	856	866	Right-handed alpha
Helix 103	AL4	B	867	879	Right-handed alpha
Helix 104	AL5	B	884	893	Right-handed alpha
Helix 105	AL6	B	896	913	Right-handed alpha
Helix 106	AL7	B	916	920	Right-handed 310
Helix 107	AL8	B	921	946	Right-handed alpha
Helix 108	AL9	B	947	983	Right-handed alpha
Helix 109	AM1	B	987	994	Right-handed 310
Helix 110	AM2	B	1007	1020	Right-handed alpha
Helix 111	AM3	B	1024	1030	Right-handed 310
Helix 112	AM4	B	1031	1042	Right-handed alpha
Helix 113	AM5	B	1043	1045	Right-handed 310
Helix 114	AM6	B	1046	1054	Right-handed alpha
Helix 115	AM7	B	1055	1060	Right-handed alpha
Helix 116	AM8	B	1063	1075	Right-handed alpha
Helix 117	AM9	B	1078	1083	Right-handed alpha
Helix 118	AN1	B	1084	1097	Right-handed alpha
Helix 119	AN2	B	1137	1149	Right-handed alpha

There are 14 sheets in PDB entry 5XWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	18	22	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	71	75	anti-parallel
Strand 3	A	80	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	165	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	419	421	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	826	first strand
Strand 2	A	882	883	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1104	first strand
Strand 2	A	1110	1117	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1119	1122	first strand
Strand 2	A	1131	1134	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	18	21	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	79	84	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	163	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	411	first strand
Strand 2	B	419	421	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	826	first strand
Strand 2	B	882	883	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1098	1104	first strand
Strand 2	B	1110	1117	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1119	1122	first strand
Strand 2	B	1131	1134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWP