Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XWW entry

There are 2 chains in PDB entry 5XWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3SER 473
B
 GLY -3SER 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5XWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 2Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
58 74Right-handed alpha
Helix 5
AA5
A
83 86Right-handed 310
Helix 6
AA6
A
98 114Right-handed alpha
Helix 7
AA7
A
137 154Right-handed alpha
Helix 8
AA8
A
169 182Right-handed alpha
Helix 9
AA9
A
228 241Right-handed alpha
Helix 10
AB1
A
252 256Right-handed 310
Helix 11
AB2
A
258 269Right-handed alpha
Helix 12
AB3
A
282 292Right-handed alpha
Helix 13
AB4
A
319 329Right-handed alpha
Helix 14
AB5
A
330 342Right-handed alpha
Helix 15
AB6
A
356 358Right-handed 310
Helix 16
AB7
A
364 384Right-handed alpha
Helix 17
AB8
A
404 414Right-handed alpha
Helix 18
AB9
A
420 435Right-handed alpha
Helix 19
AC1
A
445 454Right-handed alpha
Helix 20
AC2
A
459 464Right-handed 310
Helix 21
AC3
A
465 473Right-handed alpha
Helix 22
AC4
B
-2 2Right-handed alpha
Helix 23
AC5
B
29 33Right-handed 310
Helix 24
AC6
B
35 46Right-handed alpha
Helix 25
AC7
B
58 74Right-handed alpha
Helix 26
AC8
B
83 86Right-handed 310
Helix 27
AC9
B
98 114Right-handed alpha
Helix 28
AD1
B
137 154Right-handed alpha
Helix 29
AD2
B
169 182Right-handed alpha
Helix 30
AD3
B
228 242Right-handed alpha
Helix 31
AD4
B
252 256Right-handed 310
Helix 32
AD5
B
258 269Right-handed alpha
Helix 33
AD6
B
282 292Right-handed alpha
Helix 34
AD7
B
319 328Right-handed alpha
Helix 35
AD8
B
330 342Right-handed alpha
Helix 36
AD9
B
364 384Right-handed alpha
Helix 37
AE1
B
404 414Right-handed alpha
Helix 38
AE2
B
420 435Right-handed alpha
Helix 39
AE3
B
445 454Right-handed alpha
Helix 40
AE4
B
459 464Right-handed 310
Helix 41
AE5
B
465 473Right-handed alpha
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There are 6 sheets in PDB entry 5XWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
24 28parallel
Strand 3
A
78 81parallel
Strand 4
A
119 124parallel
Strand 5
A
158 164parallel
Strand 6
A
188 192parallel
Strand 7
A
195 203anti-parallel
Strand 8
A
4 11anti-parallel
Strand 9
A
438 441anti-parallel
Strand 10
A
389 393parallel
Strand 11
A
348 354parallel
Strand 12
A
299 304parallel
Strand 13
A
220 224parallel
Strand 14
A
245 250parallel
Strand 15
A
272 277parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
93 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
416 419parallel
Strand 3
A
443 444anti-parallel
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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
24 28parallel
Strand 3
B
78 81parallel
Strand 4
B
119 124parallel
Strand 5
B
158 164parallel
Strand 6
B
188 192parallel
Strand 7
B
195 203anti-parallel
Strand 8
B
4 11anti-parallel
Strand 9
B
438 441anti-parallel
Strand 10
B
389 393parallel
Strand 11
B
348 354parallel
Strand 12
B
299 304parallel
Strand 13
B
220 224parallel
Strand 14
B
245 250parallel
Strand 15
B
272 277parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
93 97anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 396first strand
Strand 2
B
416 419parallel
Strand 3
B
443 444anti-parallel
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