Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XWX entry

There are 2 chains in PDB entry 5XWX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 64	THR 439
B	ASP 64	THR 439

There are 12 helices in PDB entry 5XWX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	127	Right-handed 310
Helix 2	AA2	A	215	219	Right-handed 310
Helix 3	AA3	A	284	286	Right-handed 310
Helix 4	AA4	A	316	320	Right-handed 310
Helix 5	AA5	A	390	394	Right-handed alpha
Helix 6	AA6	A	412	416	Right-handed 310
Helix 7	AA7	B	123	127	Right-handed 310
Helix 8	AA8	B	215	219	Right-handed 310
Helix 9	AA9	B	284	286	Right-handed 310
Helix 10	AB1	B	316	320	Right-handed 310
Helix 11	AB2	B	390	394	Right-handed alpha
Helix 12	AB3	B	412	416	Right-handed 310

There are 26 sheets in PDB entry 5XWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	91	92	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	146	153	parallel
Strand 3	A	128	135	anti-parallel
Strand 4	A	140	142	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	98	103	anti-parallel
Strand 3	A	128	135	anti-parallel
Strand 4	A	146	153	anti-parallel
Strand 5	A	180	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	116	119	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	240	245	parallel
Strand 3	A	220	227	anti-parallel
Strand 4	A	185	190	anti-parallel
Strand 5	A	193	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	240	245	parallel
Strand 3	A	220	227	anti-parallel
Strand 4	A	234	236	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	209	211	anti-parallel
Strand 3	A	201	203	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	260	first strand
Strand 2	A	279	283	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	337	353	parallel
Strand 3	A	321	329	anti-parallel
Strand 4	A	288	294	anti-parallel
Strand 5	A	297	298	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	337	353	parallel
Strand 3	A	372	376	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	277	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	303	304	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	362	first strand
Strand 2	A	428	439	parallel
Strand 3	A	417	425	anti-parallel
Strand 4	A	380	385	anti-parallel
Strand 5	A	388	389	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	406	408	anti-parallel
Strand 3	A	398	400	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	91	92	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	146	153	parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	140	142	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	128	135	anti-parallel
Strand 4	B	146	153	anti-parallel
Strand 5	B	180	181	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	116	119	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	240	245	parallel
Strand 3	B	220	227	anti-parallel
Strand 4	B	185	190	anti-parallel
Strand 5	B	193	194	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	240	245	parallel
Strand 3	B	220	227	anti-parallel
Strand 4	B	234	236	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	209	211	anti-parallel
Strand 3	B	201	203	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	260	first strand
Strand 2	B	279	283	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	337	353	parallel
Strand 3	B	321	329	anti-parallel
Strand 4	B	288	294	anti-parallel
Strand 5	B	297	298	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	268	first strand
Strand 2	B	337	353	parallel
Strand 3	B	372	376	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	303	304	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	362	first strand
Strand 2	B	428	439	parallel
Strand 3	B	417	425	anti-parallel
Strand 4	B	380	385	anti-parallel
Strand 5	B	388	389	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	406	408	anti-parallel
Strand 3	B	398	400	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XWX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XWX