Analysis of interatomic Contacts of Structural Units in PDB entry:
5XX0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XX0 entry

There are 2 chains in PDB entry 5XX0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	SER 403
B	ASP 27	SER 403

There are 9 helices in PDB entry 5XX0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	90	Right-handed 310
Helix 2	AA2	A	178	182	Right-handed 310
Helix 3	AA3	A	247	249	Right-handed 310
Helix 4	AA4	A	375	379	Right-handed 310
Helix 5	AA5	B	86	90	Right-handed 310
Helix 6	AA6	B	178	182	Right-handed 310
Helix 7	AA7	B	247	251	Right-handed 310
Helix 8	AA8	B	279	283	Right-handed 310
Helix 9	AA9	B	375	379	Right-handed 310

There are 26 sheets in PDB entry 5XX0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	109	116	parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	102	105	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	109	116	anti-parallel
Strand 5	A	143	144	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	79	82	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	203	208	parallel
Strand 3	A	183	190	anti-parallel
Strand 4	A	148	153	anti-parallel
Strand 5	A	156	157	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	203	208	parallel
Strand 3	A	183	190	anti-parallel
Strand 4	A	197	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	172	174	anti-parallel
Strand 3	A	164	166	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	223	first strand
Strand 2	A	242	246	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	300	316	parallel
Strand 3	A	284	292	anti-parallel
Strand 4	A	251	257	anti-parallel
Strand 5	A	260	261	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	300	316	parallel
Strand 3	A	335	339	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	240	first strand
Strand 2	A	272	276	anti-parallel
Strand 3	A	266	267	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	391	402	parallel
Strand 3	A	380	388	anti-parallel
Strand 4	A	343	348	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	369	371	anti-parallel
Strand 3	A	361	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	54	55	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	109	116	parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	102	105	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	109	116	anti-parallel
Strand 5	B	143	144	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	79	82	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	203	206	parallel
Strand 3	B	183	190	anti-parallel
Strand 4	B	148	153	anti-parallel
Strand 5	B	156	157	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	127	first strand
Strand 2	B	203	206	parallel
Strand 3	B	183	190	anti-parallel
Strand 4	B	197	199	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	172	174	anti-parallel
Strand 3	B	164	166	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	223	first strand
Strand 2	B	242	246	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	300	316	parallel
Strand 3	B	284	291	anti-parallel
Strand 4	B	252	257	anti-parallel
Strand 5	B	260	261	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	300	316	parallel
Strand 3	B	335	339	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	272	276	anti-parallel
Strand 3	B	266	267	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	325	first strand
Strand 2	B	391	402	parallel
Strand 3	B	380	388	anti-parallel
Strand 4	B	343	348	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	332	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	361	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XX0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XX0