Analysis of interatomic Contacts of Structural Units in PDB entry:
5XXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XXU entry

There are 34 chains in PDB entry 5XXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
A 1 U 1790
A
GLN 12PRO 209
B
ASP 22GLY 233
C
LEU 34THR 258
D
ASN 6LYS 216
E
ALA 2MET 261
F
GLU 4ARG 192
G
MET 1ARG 221
H
PRO 16GLN 193
I
GLY 2LYS 203
J
LYS 3GLY 180
K
LYS 7THR 100
L
VAL 6PHE 161
M
GLU 20LEU 141
N
GLY 2ALA 151
O
ARG 27LEU 156
P
THR 19GLY 134
Q
LYS 9ARG 148
R
GLY 2VAL 118
S
PHE 11GLY 145
T
PRO 4LYS 154
U
GLN 129ILE 231
V
MET 1PHE 80
W
VAL 2PHE 130
X
GLY 2LYS 137
Y
GLY 5ALA 132
Z
ASN 90SER 160
a
PRO 2ARG 100
b
GLU 2LYS 80
c
GLN 3LEU 67
d
LEU 4ARG 54
e
GLY 2THR 58
f
VAL 102ALA 152
m
ALA 2ARG 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 5XXU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
51 67Right-handed alpha
Helix 3
AA3
A
71 73Right-handed 310
Helix 4
AA4
A
82 95Right-handed alpha
Helix 5
AA5
A
131 139Right-handed alpha
Helix 6
AA6
A
168 188Right-handed alpha
Helix 7
AA7
B
23 27Right-handed 310
Helix 8
AA8
B
56 62Right-handed alpha
Helix 9
AA9
B
70 75Right-handed alpha
Helix 10
AB1
B
106 114Right-handed alpha
Helix 11
AB2
B
158 179Right-handed alpha
Helix 12
AB3
B
180 189Right-handed alpha
Helix 13
AB4
B
191 202Right-handed alpha
Helix 14
AB5
B
224 232Right-handed alpha
Helix 15
AB6
C
41 50Right-handed alpha
Helix 16
AB7
C
54 62Right-handed alpha
Helix 17
AB8
C
68 75Right-handed alpha
Helix 18
AB9
C
128 143Right-handed alpha
Helix 19
AC1
C
189 198Right-handed alpha
Helix 20
AC2
C
214 232Right-handed alpha
Helix 21
AC3
C
234 238Right-handed 310
Helix 22
AC4
C
246 251Right-handed alpha
Helix 23
AC5
C
251 257Right-handed alpha
Helix 24
AC6
D
8 31Right-handed alpha
Helix 25
AC7
D
57 62Right-handed alpha
Helix 26
AC8
D
65 79Right-handed alpha
Helix 27
AC9
D
95 98Right-handed 310
Helix 28
AD1
D
99 114Right-handed alpha
Helix 29
AD2
D
116 132Right-handed alpha
Helix 30
AD3
D
163 169Right-handed alpha
Helix 31
AD4
E
15 19Right-handed 310
Helix 32
AD5
E
44 49Right-handed alpha
Helix 33
AD6
E
57 66Right-handed alpha
Helix 34
AD7
E
133 135Right-handed 310
Helix 35
AD8
E
239 243Right-handed 310
Helix 36
AD9
E
247 260Right-handed alpha
Helix 37
AE1
F
55 63Right-handed alpha
Helix 38
AE2
F
73 91Right-handed alpha
Helix 39
AE3
F
95 108Right-handed alpha
Helix 40
AE4
F
130 150Right-handed alpha
Helix 41
AE5
F
156 170Right-handed alpha
Helix 42
AE6
F
175 191Right-handed alpha
Helix 43
AE7
G
21 25Right-handed 310
Helix 44
AE8
G
137 146Right-handed alpha
Helix 45
AE9
G
178 221Right-handed alpha
Helix 46
AF1
H
17 32Right-handed alpha
Helix 47
AF2
H
38 43Right-handed alpha
Helix 48
AF3
H
69 73Right-handed alpha
Helix 49
AF4
H
80 92Right-handed alpha
Helix 50
AF5
H
105 110Right-handed 310
Helix 51
AF6
H
121 135Right-handed alpha
Helix 52
AF7
H
165 184Right-handed alpha
Helix 53
AF8
I
49 51Right-handed 310
Helix 54
AF9
I
87 93Right-handed alpha
Helix 55
AG1
I
106 117Right-handed alpha
Helix 56
AG2
I
141 151Right-handed alpha
Helix 57
AG3
I
156 165Right-handed alpha
Helix 58
AG4
I
175 180Right-handed alpha
Helix 59
AG5
I
189 201Right-handed alpha
Helix 60
AG6
J
20 35Right-handed alpha
Helix 61
AG7
J
38 61Right-handed alpha
Helix 62
AG8
J
66 83Right-handed alpha
Helix 63
AG9
J
93 98Right-handed alpha
Helix 64
AH1
J
100 106Right-handed alpha
Helix 65
AH2
J
108 117Right-handed alpha
Helix 66
AH3
J
121 131Right-handed alpha
Helix 67
AH4
J
171 180Right-handed alpha
Helix 68
AH5
K
12 27Right-handed alpha
Helix 69
AH6
K
46 59Right-handed alpha
Helix 70
AH7
K
77 89Right-handed alpha
Helix 71
AH8
L
47 53Right-handed alpha
Helix 72
AH9
M
26 39Right-handed alpha
Helix 73
AI1
M
44 53Right-handed alpha
Helix 74
AI2
M
68 83Right-handed alpha
Helix 75
AI3
M
95 99Right-handed 310
Helix 76
AI4
M
131 139Right-handed alpha
Helix 77
AI5
N
29 44Right-handed alpha
Helix 78
AI6
N
46 58Right-handed alpha
Helix 79
AI7
N
62 67Right-handed alpha
Helix 80
AI8
N
70 79Right-handed alpha
Helix 81
AI9
N
85 103Right-handed alpha
Helix 82
AJ1
N
108 132Right-handed alpha
Helix 83
AJ2
N
145 151Right-handed alpha
Helix 84
AJ3
O
63 67Right-handed alpha
Helix 85
AJ4
O
75 94Right-handed alpha
Helix 86
AJ5
O
114 128Right-handed alpha
Helix 87
AJ6
P
26 31Right-handed alpha
Helix 88
AJ7
P
34 39Right-handed alpha
Helix 89
AJ8
P
44 53Right-handed alpha
Helix 90
AJ9
P
57 68Right-handed alpha
Helix 91
AK1
Q
46 48Right-handed 310
Helix 92
AK2
Q
49 54Right-handed alpha
Helix 93
AK3
Q
54 61Right-handed alpha
Helix 94
AK4
Q
61 66Right-handed alpha
Helix 95
AK5
Q
79 101Right-handed alpha
Helix 96
AK6
Q
104 117Right-handed alpha
Helix 97
AK7
R
6 20Right-handed alpha
Helix 98
AK8
R
27 39Right-handed alpha
Helix 99
AK9
R
43 64Right-handed alpha
Helix 100
AL1
R
72 84Right-handed alpha
Helix 101
AL2
R
99 110Right-handed alpha
Helix 102
AL3
S
27 32Right-handed alpha
Helix 103
AL4
S
33 35Right-handed 310
Helix 104
AL5
S
39 50Right-handed alpha
Helix 105
AL6
S
62 75Right-handed alpha
Helix 106
AL7
S
103 120Right-handed alpha
Helix 107
AL8
S
121 130Right-handed alpha
Helix 108
AL9
T
18 22Right-handed 310
Helix 109
AM1
T
23 39Right-handed alpha
Helix 110
AM2
T
45 49Right-handed 310
Helix 111
AM3
T
64 80Right-handed alpha
Helix 112
AM4
T
84 92Right-handed alpha
Helix 113
AM5
T
109 124Right-handed alpha
Helix 114
AM6
T
138 154Right-handed alpha
Helix 115
AM7
U
143 161Right-handed alpha
Helix 116
AM8
U
208 218Right-handed alpha
Helix 117
AM9
V
55 62Right-handed alpha
Helix 118
AN1
V
63 72Right-handed alpha
Helix 119
AN2
W
5 21Right-handed alpha
Helix 120
AN3
W
31 45Right-handed alpha
Helix 121
AN4
W
85 93Right-handed alpha
Helix 122
AN5
W
113 119Right-handed alpha
Helix 123
AN6
X
9 21Right-handed alpha
Helix 124
AN7
X
24 32Right-handed alpha
Helix 125
AN8
X
33 38Right-handed alpha
Helix 126
AN9
X
129 136Right-handed alpha
Helix 127
AO1
Y
38 51Right-handed alpha
Helix 128
AO2
Y
81 89Right-handed alpha
Helix 129
AO3
Y
90 98Right-handed alpha
Helix 130
AO4
Y
107 121Right-handed alpha
Helix 131
AO5
Y
126 132Right-handed alpha
Helix 132
AO6
Z
98 110Right-handed alpha
Helix 133
AO7
Z
114 122Right-handed alpha
Helix 134
AO8
Z
125 139Right-handed alpha
Helix 135
AO9
a
50 57Right-handed alpha
Helix 136
AP1
a
75 82Right-handed alpha
Helix 137
AP2
a
90 94Right-handed 310
Helix 138
AP3
b
9 16Right-handed alpha
Helix 139
AP4
d
38 44Right-handed alpha
Helix 140
AP5
d
44 49Right-handed alpha
Helix 141
AP6
e
13 18Right-handed alpha
Helix 142
AP7
e
32 45Right-handed alpha
Helix 143
AP8
m
5 9Right-handed 310
Helix 144
AP9
m
16 38Right-handed alpha
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There are 46 sheets in PDB entry 5XXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
39 40first strand
Strand 2
A
49 50anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
75 79parallel
Strand 3
A
122 125parallel
Strand 4
A
145 147parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 47first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
95 104parallel
Strand 4
B
83 91anti-parallel
Strand 5
B
65 69anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
44 47first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
95 104parallel
Strand 4
B
215 216anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
120 128first strand
Strand 2
B
134 142anti-parallel
Strand 3
B
208 211anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
85 97first strand
Strand 2
C
102 114anti-parallel
Strand 3
C
118 126anti-parallel
Strand 4
C
144 146anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 169first strand
Strand 2
C
174 178anti-parallel
Strand 3
C
204 208anti-parallel
Strand 4
C
186 187parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 42first strand
Strand 2
D
49 54anti-parallel
Strand 3
D
87 92parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 156first strand
Strand 2
D
135 140anti-parallel
Strand 3
D
183 191anti-parallel
Strand 4
D
170 178anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 10first strand
Strand 2
E
27 28anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
42 43first strand
Strand 2
E
83 84anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
70 72first strand
Strand 2
E
89 92anti-parallel
Strand 3
E
97 103anti-parallel
Strand 4
E
109 114anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
137 141first strand
Strand 2
E
122 131anti-parallel
Strand 3
E
159 162anti-parallel
Strand 4
E
169 172anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
217 221first strand
Strand 2
E
207 211anti-parallel
Strand 3
E
192 199anti-parallel
Strand 4
E
179 183anti-parallel
Strand 5
E
225 230anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
111 115first strand
Strand 2
F
124 128anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
12 17first strand
Strand 2
G
2 7anti-parallel
Strand 3
G
108 115parallel
Strand 4
G
49 56anti-parallel
Strand 5
G
36 37anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
73 77first strand
Strand 2
G
93 97anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
50 53first strand
Strand 2
H
62 68anti-parallel
Strand 3
H
94 100parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
187 188first strand
Strand 2
H
154 158parallel
Strand 3
H
139 146anti-parallel
Strand 4
W
47 53anti-parallel
Strand 5
W
60 65anti-parallel
Strand 6
W
24 27anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
3 4first strand
Strand 2
I
29 30anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
43 47first strand
Strand 2
I
53 57anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
62 67first strand
Strand 2
I
72 83anti-parallel
Strand 3
I
101 104anti-parallel
Strand 4
I
168 172anti-parallel
Strand 5
I
183 186anti-parallel
Strand 6
I
62 67parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
135 136first strand
Strand 2
J
139 140anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
28 30first strand
Strand 2
K
73 76anti-parallel
Strand 3
K
63 64anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
72 79first strand
Strand 2
L
85 93anti-parallel
Strand 3
L
104 112anti-parallel
Strand 4
L
140 146parallel
Strand 5
L
125 130anti-parallel
Strand 6
L
72 79anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
41 42first strand
Strand 2
M
119 121anti-parallel
Strand 3
M
59 61anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
38 40first strand
Strand 2
O
45 50anti-parallel
Strand 3
O
57 62anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
97 102first strand
Strand 2
O
130 136parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
81 83first strand
Strand 2
P
99 102parallel
Strand 3
P
107 110anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
11 16first strand
Strand 2
Q
22 29anti-parallel
Strand 3
Q
68 75anti-parallel
Strand 4
Q
34 36parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
94 96first strand
Strand 2
T
104 106anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
126 127first strand
Strand 2
T
136 137anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
165 169first strand
Strand 2
U
201 205anti-parallel
Strand 3
U
134 139anti-parallel
Strand 4
U
225 227anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
173 177first strand
Strand 2
U
194 198anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
32 37first strand
Strand 2
V
49 54anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
71 74first strand
Strand 2
W
124 130anti-parallel
Strand 3
W
101 106anti-parallel
Strand 4
W
109 112anti-parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
46 47first strand
Strand 2
X
100 104anti-parallel
Strand 3
X
120 125anti-parallel
Strand 4
X
80 84parallel
Strand 5
X
69 74anti-parallel
Strand 6
X
49 55anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
8 17first strand
Strand 2
Y
22 30anti-parallel
Strand 3
Y
71 79anti-parallel
Strand 4
Y
58 65anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
112 113first strand
Strand 2
Z
155 156anti-parallel
Strand 3
Z
143 144anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
20 22first strand
Strand 2
a
29 31anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
37 42first strand
Strand 2
a
67 72anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
42 45first strand
Strand 2
b
30 34anti-parallel
Strand 3
b
76 79anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
62 63first strand
Strand 2
b
70 71anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
41 45first strand
Strand 2
c
23 29anti-parallel
Strand 3
c
5 15anti-parallel
Strand 4
c
54 57anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
28 29first strand
Strand 2
d
36 37anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
132 133first strand
Strand 2
f
140 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il