Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XYA entry

There is 1 chain in PDB entry 5XYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 118LYS 1574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5XYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 137Right-handed alpha
Helix 2
AA2
A
165 169Right-handed 310
Helix 3
AA3
A
173 185Right-handed alpha
Helix 4
AA4
A
278 289Right-handed alpha
Helix 5
AA5
A
324 339Right-handed alpha
Helix 6
AA6
A
358 371Right-handed alpha
Helix 7
AA7
A
429 433Right-handed 310
Helix 8
AA8
A
438 442Right-handed 310
Helix 9
AA9
A
615 638Right-handed alpha
Helix 10
AB1
A
645 657Right-handed alpha
Helix 11
AB2
A
671 676Right-handed alpha
Helix 12
AB3
A
681 687Right-handed alpha
Helix 13
AB4
A
775 786Right-handed alpha
Helix 14
AB5
A
819 823Right-handed 310
Helix 15
AB6
A
829 836Right-handed alpha
Helix 16
AB7
A
973 976Right-handed 310
Helix 17
AB8
A
1241 1245Right-handed 310
Helix 18
AB9
A
1368 1370Right-handed 310
Helix 19
AC1
A
1389 1393Right-handed 310
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There are 22 sheets in PDB entry 5XYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
311 314parallel
Strand 3
A
147 151parallel
Strand 4
A
342 345parallel
Strand 5
A
374 378parallel
Strand 6
A
412 416parallel
Strand 7
A
594 596parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
566 569anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 659first strand
Strand 2
A
679 680anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 693first strand
Strand 2
A
709 718anti-parallel
Strand 3
A
765 774anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 706first strand
Strand 2
A
809 817parallel
Strand 3
A
790 799anti-parallel
Strand 4
A
724 738anti-parallel
Strand 5
A
743 761anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 882first strand
Strand 2
A
860 865anti-parallel
Strand 3
A
919 922anti-parallel
Strand 4
A
970 971anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
886 887first strand
Strand 2
A
893 894anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 907first strand
Strand 2
A
1011 1016parallel
Strand 3
A
990 1000anti-parallel
Strand 4
A
928 937anti-parallel
Strand 5
A
948 949anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 907first strand
Strand 2
A
1011 1016parallel
Strand 3
A
990 1000anti-parallel
Strand 4
A
928 937anti-parallel
Strand 5
A
954 956anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1092 1093first strand
Strand 2
A
1034 1036anti-parallel
Strand 3
A
1025 1029anti-parallel
Strand 4
A
1133 1136anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1081 1083first strand
Strand 2
A
1048 1056anti-parallel
Strand 3
A
1104 1110anti-parallel
Strand 4
A
1115 1119anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1069first strand
Strand 2
A
1074 1079anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1178 1182first strand
Strand 2
A
1161 1166anti-parallel
Strand 3
A
1201 1202anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1189first strand
Strand 2
A
1279 1283parallel
Strand 3
A
1259 1267anti-parallel
Strand 4
A
1214 1218anti-parallel
Strand 5
A
1230 1231anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1189first strand
Strand 2
A
1279 1283parallel
Strand 3
A
1259 1267anti-parallel
Strand 4
A
1275 1276anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1294 1298first strand
Strand 2
A
1301 1305anti-parallel
Strand 3
A
1359 1361anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1348 1350first strand
Strand 2
A
1317 1325anti-parallel
Strand 3
A
1372 1378anti-parallel
Strand 4
A
1383 1387anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1333 1338first strand
Strand 2
A
1341 1346anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1435 1436first strand
Strand 2
A
1439 1446anti-parallel
Strand 3
A
1398 1406anti-parallel
Strand 4
A
1480 1489parallel
Strand 5
A
1462 1464anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1418 1424first strand
Strand 2
A
1448 1457anti-parallel
Strand 3
A
1469 1474anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1523 1524first strand
Strand 2
A
1527 1536anti-parallel
Strand 3
A
1492 1499anti-parallel
Strand 4
A
1565 1570parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1518 1521first strand
Strand 2
A
1508 1513anti-parallel
Strand 3
A
1539 1545anti-parallel
Strand 4
A
1557 1559anti-parallel
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