Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XYH entry

There is 1 chain in PDB entry 5XYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34ILE 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5XYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 60Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
85 91Right-handed alpha
Helix 4
AA4
A
92 95Right-handed 310
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
144 155Right-handed alpha
Helix 7
AA7
A
155 164Right-handed alpha
Helix 8
AA8
A
165 169Right-handed 310
Helix 9
AA9
A
181 188Right-handed alpha
Helix 10
AB1
A
191 200Right-handed alpha
Helix 11
AB2
A
201 216Right-handed alpha
Helix 12
AB3
A
230 236Right-handed 310
Helix 13
AB4
A
237 251Right-handed alpha
Helix 14
AB5
A
254 259Right-handed 310
Helix 15
AB6
A
290 292Right-handed 310
Helix 16
AB7
A
302 317Right-handed alpha
Helix 17
AB8
A
347 356Right-handed alpha
Helix 18
AB9
A
414 418Right-handed 310
Helix 19
AC1
A
442 452Right-handed alpha
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There are 3 sheets in PDB entry 5XYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
118 124parallel
Strand 3
A
81 83parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
118 124parallel
Strand 3
A
172 177parallel
Strand 4
A
220 225parallel
Strand 5
A
261 264parallel
Strand 6
A
324 328parallel
Strand 7
A
386 390parallel
Strand 8
A
379 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
287 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il