Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XYK entry

There is 1 chain in PDB entry 5XYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 40LEU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5XYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
69 73Right-handed 310
Helix 2
AA2
E
87 99Right-handed alpha
Helix 3
AA3
E
113 127Right-handed alpha
Helix 4
AA4
E
136 138Right-handed 310
Helix 5
AA5
E
140 144Right-handed 310
Helix 6
AA6
E
146 160Right-handed alpha
Helix 7
AA7
E
167 185Right-handed alpha
Helix 8
AA8
E
189 194Right-handed alpha
Helix 9
AA9
E
195 198Right-handed 310
Helix 10
AB1
E
199 214Right-handed alpha
Helix 11
AB2
E
215 222Right-handed alpha
Helix 12
AB3
E
282 294Right-handed alpha
Helix 13
AB4
E
305 314Right-handed alpha
Helix 14
AB5
E
320 328Right-handed alpha
Helix 15
AB6
E
338 342Right-handed 310
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There are 3 sheets in PDB entry 5XYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 45first strand
Strand 2
E
48 55anti-parallel
Strand 3
E
251 254anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
130 134first strand
Strand 2
E
104 109parallel
Strand 3
E
61 66parallel
Strand 4
E
233 238parallel
Strand 5
E
268 279anti-parallel
Strand 6
E
257 263anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
243 244first strand
Strand 2
E
335 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il