Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XYR entry

There is 1 chain in PDB entry 5XYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 119	LYS 1574

There are 22 helices in PDB entry 5XYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	131	Right-handed alpha
Helix 2	AA2	A	132	137	Right-handed alpha
Helix 3	AA3	A	165	169	Right-handed 310
Helix 4	AA4	A	173	182	Right-handed alpha
Helix 5	AA5	A	278	288	Right-handed alpha
Helix 6	AA6	A	324	339	Right-handed alpha
Helix 7	AA7	A	358	370	Right-handed alpha
Helix 8	AA8	A	429	433	Right-handed 310
Helix 9	AA9	A	435	439	Right-handed 310
Helix 10	AB1	A	502	508	Right-handed alpha
Helix 11	AB2	A	546	551	Right-handed alpha
Helix 12	AB3	A	615	638	Right-handed alpha
Helix 13	AB4	A	645	657	Right-handed alpha
Helix 14	AB5	A	671	676	Right-handed alpha
Helix 15	AB6	A	681	689	Right-handed alpha
Helix 16	AB7	A	778	786	Right-handed alpha
Helix 17	AB8	A	819	823	Right-handed 310
Helix 18	AB9	A	829	836	Right-handed alpha
Helix 19	AC1	A	973	976	Right-handed 310
Helix 20	AC2	A	1240	1245	Right-handed 310
Helix 21	AC3	A	1368	1370	Right-handed 310
Helix 22	AC4	A	1388	1392	Right-handed alpha

There are 25 sheets in PDB entry 5XYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	201	first strand
Strand 2	A	309	314	parallel
Strand 3	A	146	151	parallel
Strand 4	A	342	344	parallel
Strand 5	A	374	378	parallel
Strand 6	A	412	418	parallel
Strand 7	A	594	599	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	424	first strand
Strand 2	A	566	569	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	560	561	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	512	514	parallel
Strand 3	A	541	543	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	605	first strand
Strand 2	A	609	613	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	668	669	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	693	first strand
Strand 2	A	709	718	anti-parallel
Strand 3	A	766	774	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	706	first strand
Strand 2	A	809	817	parallel
Strand 3	A	790	800	anti-parallel
Strand 4	A	726	730	anti-parallel
Strand 5	A	754	758	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	737	first strand
Strand 2	A	744	750	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	880	882	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	919	922	anti-parallel
Strand 4	A	970	971	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	885	887	first strand
Strand 2	A	893	895	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1008	1016	parallel
Strand 3	A	990	1000	anti-parallel
Strand 4	A	928	937	anti-parallel
Strand 5	A	948	949	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1008	1016	parallel
Strand 3	A	990	1000	anti-parallel
Strand 4	A	928	937	anti-parallel
Strand 5	A	954	956	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1037	first strand
Strand 2	A	1025	1028	anti-parallel
Strand 3	A	1135	1136	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1084	first strand
Strand 2	A	1048	1056	anti-parallel
Strand 3	A	1104	1110	anti-parallel
Strand 4	A	1115	1119	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1069	first strand
Strand 2	A	1074	1079	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1179	1182	first strand
Strand 2	A	1161	1165	anti-parallel
Strand 3	A	1201	1202	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1188	1189	first strand
Strand 2	A	1274	1283	parallel
Strand 3	A	1259	1268	anti-parallel
Strand 4	A	1211	1218	anti-parallel
Strand 5	A	1230	1231	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1294	1298	first strand
Strand 2	A	1301	1305	anti-parallel
Strand 3	A	1359	1361	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1348	1350	first strand
Strand 2	A	1317	1325	anti-parallel
Strand 3	A	1372	1378	anti-parallel
Strand 4	A	1383	1387	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1333	1337	first strand
Strand 2	A	1342	1346	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1434	1436	first strand
Strand 2	A	1439	1446	anti-parallel
Strand 3	A	1398	1406	anti-parallel
Strand 4	A	1480	1489	parallel
Strand 5	A	1462	1464	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1423	first strand
Strand 2	A	1448	1457	anti-parallel
Strand 3	A	1469	1474	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1530	1536	first strand
Strand 2	A	1492	1498	anti-parallel
Strand 3	A	1565	1569	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1518	1520	first strand
Strand 2	A	1510	1513	anti-parallel
Strand 3	A	1539	1543	anti-parallel
Strand 4	A	1557	1559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYR