Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XYV entry

There are 4 chains in PDB entry 5XYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 355PRO 417
B
 LYS 354PRO 417
C
 GLU 2SER 53
D
 ASP 5ARG 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5XYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
356 361Right-handed 310
Helix 2
AA2
A
394 398Right-handed alpha
Helix 3
AA3
A
401 411Right-handed alpha
Helix 4
AA4
B
356 361Right-handed 310
Helix 5
AA5
B
395 397Right-handed 310
Helix 6
AA6
B
401 412Right-handed alpha
Helix 7
AA7
C
3 7Right-handed 310
Helix 8
AA8
C
8 24Right-handed alpha
Helix 9
AA9
C
25 28Right-handed 310
Helix 10
AB1
C
29 46Right-handed alpha
Helix 11
AB2
D
8 24Right-handed alpha
Helix 12
AB3
D
25 28Right-handed 310
Helix 13
AB4
D
29 43Right-handed alpha
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There are 3 sheets in PDB entry 5XYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 373first strand
Strand 2
A
376 383anti-parallel
Strand 3
A
389 393anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 415first strand
Strand 2
C
49 51parallel
Strand 3
B
413 415anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 373first strand
Strand 2
B
376 383anti-parallel
Strand 3
B
389 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il