Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XYZ entry

There are 2 chains in PDB entry 5XYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 394ASP 656
B
 SER 394ASP 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5XYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
445 452Right-handed alpha
Helix 3
AA3
A
482 488Right-handed alpha
Helix 4
AA4
A
494 515Right-handed alpha
Helix 5
AA5
A
523 526Right-handed 310
Helix 6
AA6
A
560 564Right-handed 310
Helix 7
AA7
A
565 570Right-handed alpha
Helix 8
AA8
A
575 592Right-handed alpha
Helix 9
AA9
A
602 613Right-handed alpha
Helix 10
AB1
A
623 633Right-handed alpha
Helix 11
AB2
A
643 656Right-handed alpha
Helix 12
AB3
B
398 402Right-handed 310
Helix 13
AB4
B
440 441Right-handed 310
Helix 14
AB5
B
443 443Right-handed 310
Helix 15
AB6
B
444 452Right-handed alpha
Helix 16
AB7
B
482 489Right-handed alpha
Helix 17
AB8
B
494 514Right-handed alpha
Helix 18
AB9
B
560 564Right-handed 310
Helix 19
AC1
B
565 570Right-handed alpha
Helix 20
AC2
B
576 592Right-handed alpha
Helix 21
AC3
B
602 612Right-handed alpha
Helix 22
AC4
B
623 632Right-handed alpha
Helix 23
AC5
B
633 635Right-handed 310
Helix 24
AC6
B
637 641Right-handed 310
Helix 25
AC7
B
643 656Right-handed alpha
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There are 4 sheets in PDB entry 5XYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
417 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
528 529anti-parallel
Strand 3
A
535 536anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 421first strand
Strand 2
B
425 431anti-parallel
Strand 3
B
471 475anti-parallel
Strand 4
B
460 463anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
527 529anti-parallel
Strand 3
B
535 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il