Analysis of interatomic Contacts of Structural Units in PDB entry:
5XZ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XZ5 entry

There are 2 chains in PDB entry 5XZ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 398
B
 GLN 3ILE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5XZ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 41Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
89 91Right-handed 310
Helix 4
AA4
A
92 107Right-handed alpha
Helix 5
AA5
A
145 150Right-handed alpha
Helix 6
AA6
A
159 171Right-handed alpha
Helix 7
AA7
A
174 195Right-handed alpha
Helix 8
AA8
A
223 227Right-handed 310
Helix 9
AA9
A
228 234Right-handed alpha
Helix 10
AB1
A
266 272Right-handed alpha
Helix 11
AB2
A
289 295Right-handed 310
Helix 12
AB3
A
296 309Right-handed alpha
Helix 13
AB4
A
312 316Right-handed 310
Helix 14
AB5
A
325 337Right-handed alpha
Helix 15
AB6
A
339 343Right-handed 310
Helix 16
AB7
A
348 353Right-handed alpha
Helix 17
AB8
A
355 374Right-handed alpha
Helix 18
AB9
B
26 41Right-handed alpha
Helix 19
AC1
B
67 76Right-handed alpha
Helix 20
AC2
B
89 91Right-handed 310
Helix 21
AC3
B
92 107Right-handed alpha
Helix 22
AC4
B
145 150Right-handed alpha
Helix 23
AC5
B
159 171Right-handed alpha
Helix 24
AC6
B
174 195Right-handed alpha
Helix 25
AC7
B
223 227Right-handed 310
Helix 26
AC8
B
228 234Right-handed alpha
Helix 27
AC9
B
266 272Right-handed alpha
Helix 28
AD1
B
289 295Right-handed 310
Helix 29
AD2
B
296 309Right-handed alpha
Helix 30
AD3
B
312 316Right-handed 310
Helix 31
AD4
B
325 337Right-handed alpha
Helix 32
AD5
B
339 343Right-handed 310
Helix 33
AD6
B
348 353Right-handed alpha
Helix 34
AD7
B
355 374Right-handed alpha
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There are 8 sheets in PDB entry 5XZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
255 265anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
53 57parallel
Strand 5
A
83 87parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
255 265anti-parallel
Strand 3
A
5 12anti-parallel
Strand 4
A
278 287anti-parallel
Strand 5
A
389 397anti-parallel
Strand 6
A
378 385anti-parallel
Strand 7
A
318 321parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
143 144anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
216 218anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
255 265anti-parallel
Strand 3
B
112 120anti-parallel
Strand 4
B
53 57parallel
Strand 5
B
83 87parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
255 265anti-parallel
Strand 3
B
5 12anti-parallel
Strand 4
B
278 287anti-parallel
Strand 5
B
389 397anti-parallel
Strand 6
B
378 385anti-parallel
Strand 7
B
318 321parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
143 144anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
216 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il