Analysis of interatomic Contacts of Structural Units in PDB entry:
5XZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XZV entry

There are 2 chains in PDB entry 5XZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 16	TRP 465
B	ILE 32	VAL 467

There are 29 helices in PDB entry 5XZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed alpha
Helix 2	AA2	A	51	58	Right-handed alpha
Helix 3	AA3	A	95	97	Right-handed 310
Helix 4	AA4	A	148	164	Right-handed alpha
Helix 5	AA5	A	231	235	Right-handed alpha
Helix 6	AA6	A	237	249	Right-handed alpha
Helix 7	AA7	A	280	289	Right-handed alpha
Helix 8	AA8	A	292	313	Right-handed alpha
Helix 9	AA9	A	321	323	Right-handed 310
Helix 10	AB1	A	363	367	Right-handed 310
Helix 11	AB2	A	384	403	Right-handed alpha
Helix 12	AB3	A	412	423	Right-handed alpha
Helix 13	AB4	A	436	444	Right-handed alpha
Helix 14	AB5	A	457	463	Right-handed alpha
Helix 15	AB6	B	51	57	Right-handed alpha
Helix 16	AB7	B	148	157	Right-handed alpha
Helix 17	AB8	B	191	195	Right-handed 310
Helix 18	AB9	B	239	251	Right-handed alpha
Helix 19	AC1	B	280	289	Right-handed alpha
Helix 20	AC2	B	292	313	Right-handed alpha
Helix 21	AC3	B	321	323	Right-handed 310
Helix 22	AC4	B	358	362	Right-handed 310
Helix 23	AC5	B	363	368	Right-handed 310
Helix 24	AC6	B	384	404	Right-handed alpha
Helix 25	AC7	B	412	422	Right-handed alpha
Helix 26	AC8	B	426	433	Right-handed alpha
Helix 27	AC9	B	436	447	Right-handed alpha
Helix 28	AD1	B	450	454	Right-handed 310
Helix 29	AD2	B	456	462	Right-handed alpha

There are 8 sheets in PDB entry 5XZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	129	133	anti-parallel
Strand 5	A	109	111	anti-parallel
Strand 6	A	114	115	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	88	93	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	122	124	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	206	first strand
Strand 2	A	210	217	anti-parallel
Strand 3	A	223	230	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	259	264	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	334	337	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	143	147	anti-parallel
Strand 4	B	129	131	anti-parallel
Strand 5	B	110	111	anti-parallel
Strand 6	B	114	115	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	64	69	parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	99	103	anti-parallel
Strand 5	B	121	124	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	223	229	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	259	264	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	334	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XZV