Analysis of interatomic Contacts of Structural Units in PDB entry:
5XZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XZW entry

There are 2 chains in PDB entry 5XZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	TRP 465
B	ILE 32	VAL 467

There are 28 helices in PDB entry 5XZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	23	Right-handed alpha
Helix 2	AA2	A	51	56	Right-handed alpha
Helix 3	AA3	A	95	97	Right-handed 310
Helix 4	AA4	A	148	160	Right-handed alpha
Helix 5	AA5	A	192	196	Right-handed alpha
Helix 6	AA6	A	232	235	Right-handed 310
Helix 7	AA7	A	237	249	Right-handed alpha
Helix 8	AA8	A	280	289	Right-handed alpha
Helix 9	AA9	A	292	313	Right-handed alpha
Helix 10	AB1	A	321	323	Right-handed 310
Helix 11	AB2	A	358	362	Right-handed 310
Helix 12	AB3	A	384	403	Right-handed alpha
Helix 13	AB4	A	412	423	Right-handed alpha
Helix 14	AB5	A	436	444	Right-handed alpha
Helix 15	AB6	A	456	461	Right-handed alpha
Helix 16	AB7	B	51	56	Right-handed alpha
Helix 17	AB8	B	148	156	Right-handed alpha
Helix 18	AB9	B	191	195	Right-handed 310
Helix 19	AC1	B	238	251	Right-handed alpha
Helix 20	AC2	B	280	289	Right-handed alpha
Helix 21	AC3	B	292	313	Right-handed alpha
Helix 22	AC4	B	358	362	Right-handed 310
Helix 23	AC5	B	385	404	Right-handed alpha
Helix 24	AC6	B	412	422	Right-handed alpha
Helix 25	AC7	B	427	433	Right-handed alpha
Helix 26	AC8	B	436	447	Right-handed alpha
Helix 27	AC9	B	450	454	Right-handed 310
Helix 28	AD1	B	456	462	Right-handed alpha

There are 8 sheets in PDB entry 5XZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	140	147	anti-parallel
Strand 4	A	128	133	anti-parallel
Strand 5	A	110	111	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	88	93	anti-parallel
Strand 3	A	99	104	anti-parallel
Strand 4	A	122	123	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	206	first strand
Strand 2	A	210	217	anti-parallel
Strand 3	A	223	230	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	259	264	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	334	337	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	141	147	anti-parallel
Strand 4	B	129	132	anti-parallel
Strand 5	B	109	111	anti-parallel
Strand 6	B	114	115	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	64	69	parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	99	103	anti-parallel
Strand 5	B	121	123	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	203	first strand
Strand 2	B	210	217	anti-parallel
Strand 3	B	223	230	anti-parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	259	264	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	334	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XZW