Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y07 entry

There are 2 chains in PDB entry 5Y07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLY 186
B
 THR 8ASP 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Y07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
41 56Right-handed alpha
Helix 4
AA4
A
71 83Right-handed alpha
Helix 5
AA5
A
118 120Right-handed 310
Helix 6
AA6
A
136 149Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
166 174Right-handed alpha
Helix 9
AA9
B
9 19Right-handed alpha
Helix 10
AB1
B
35 40Right-handed alpha
Helix 11
AB2
B
41 56Right-handed alpha
Helix 12
AB3
B
71 83Right-handed alpha
Helix 13
AB4
B
118 120Right-handed 310
Helix 14
AB5
B
136 149Right-handed alpha
Helix 15
AB6
B
163 165Right-handed 310
Helix 16
AB7
B
166 174Right-handed alpha
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There are 6 sheets in PDB entry 5Y07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
32 34anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
63 67parallel
Strand 3
A
125 133parallel
Strand 4
A
152 161parallel
Strand 5
A
177 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 105first strand
Strand 2
A
110 116anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
31 34anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
63 67parallel
Strand 3
B
125 133parallel
Strand 4
B
152 161parallel
Strand 5
B
177 183parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 106first strand
Strand 2
B
109 116anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il