Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y0E entry

There are 3 chains in PDB entry 5Y0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	SER 444
B	ASP 3	SER 444
C	ASP 3	ARG 443

There are 38 helices in PDB entry 5Y0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	38	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed 310
Helix 3	AA3	A	157	159	Right-handed 310
Helix 4	AA4	A	192	195	Right-handed 310
Helix 5	AA5	A	196	223	Right-handed alpha
Helix 6	AA6	A	228	254	Right-handed alpha
Helix 7	AA7	A	258	274	Right-handed alpha
Helix 8	AA8	A	275	277	Right-handed 310
Helix 9	AA9	A	293	310	Right-handed alpha
Helix 10	AB1	A	338	342	Right-handed alpha
Helix 11	AB2	A	354	365	Right-handed alpha
Helix 12	AB3	A	374	381	Right-handed alpha
Helix 13	AB4	A	413	420	Right-handed alpha
Helix 14	AB5	B	16	38	Right-handed alpha
Helix 15	AB6	B	53	57	Right-handed 310
Helix 16	AB7	B	157	159	Right-handed 310
Helix 17	AB8	B	192	195	Right-handed 310
Helix 18	AB9	B	196	222	Right-handed alpha
Helix 19	AC1	B	228	254	Right-handed alpha
Helix 20	AC2	B	258	274	Right-handed alpha
Helix 21	AC3	B	275	277	Right-handed 310
Helix 22	AC4	B	293	309	Right-handed alpha
Helix 23	AC5	B	338	342	Right-handed alpha
Helix 24	AC6	B	354	365	Right-handed alpha
Helix 25	AC7	B	371	381	Right-handed alpha
Helix 26	AC8	B	411	420	Right-handed alpha
Helix 27	AC9	C	16	39	Right-handed alpha
Helix 28	AD1	C	52	55	Right-handed 310
Helix 29	AD2	C	192	195	Right-handed 310
Helix 30	AD3	C	196	223	Right-handed alpha
Helix 31	AD4	C	228	254	Right-handed alpha
Helix 32	AD5	C	258	274	Right-handed alpha
Helix 33	AD6	C	275	277	Right-handed 310
Helix 34	AD7	C	293	309	Right-handed alpha
Helix 35	AD8	C	338	342	Right-handed 310
Helix 36	AD9	C	354	361	Right-handed alpha
Helix 37	AE1	C	361	365	Right-handed alpha
Helix 38	AE2	C	374	379	Right-handed alpha

There are 18 sheets in PDB entry 5Y0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	C	142	149	anti-parallel
Strand 3	C	124	131	anti-parallel
Strand 4	C	112	113	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	50	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	74	78	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	88	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	96	103	anti-parallel
Strand 3	A	163	174	anti-parallel
Strand 4	A	180	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	124	131	parallel
Strand 3	A	142	149	anti-parallel
Strand 4	B	6	7	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	320	first strand
Strand 2	A	436	443	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	404	408	anti-parallel
Strand 5	A	387	389	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	329	333	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	366	370	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	74	78	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	87	88	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	96	103	anti-parallel
Strand 3	B	163	174	anti-parallel
Strand 4	B	180	182	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	124	132	parallel
Strand 3	B	141	149	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	436	443	anti-parallel
Strand 3	B	343	350	anti-parallel
Strand 4	B	404	408	anti-parallel
Strand 5	B	387	389	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	329	333	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	366	370	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	50	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	74	78	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	87	88	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	96	103	anti-parallel
Strand 3	C	163	174	anti-parallel
Strand 4	C	180	182	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	436	442	anti-parallel
Strand 3	C	344	350	anti-parallel
Strand 4	C	404	408	anti-parallel
Strand 5	C	387	390	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	329	333	anti-parallel
Strand 3	C	423	428	anti-parallel
Strand 4	C	366	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0E