Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y0L entry

There are 2 chains in PDB entry 5Y0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19LYS 355
B
 GLY 15LYS 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5Y0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
109 113Right-handed 310
Helix 3
AA3
A
114 128Right-handed alpha
Helix 4
AA4
A
133 137Right-handed 310
Helix 5
AA5
A
158 168Right-handed alpha
Helix 6
AA6
A
179 183Right-handed 310
Helix 7
AA7
A
191 195Right-handed 310
Helix 8
AA8
A
245 258Right-handed alpha
Helix 9
AA9
A
279 294Right-handed alpha
Helix 10
AB1
A
334 355Right-handed alpha
Helix 11
AB2
B
34 38Right-handed 310
Helix 12
AB3
B
109 113Right-handed 310
Helix 13
AB4
B
114 128Right-handed alpha
Helix 14
AB5
B
133 137Right-handed 310
Helix 15
AB6
B
158 168Right-handed alpha
Helix 16
AB7
B
179 183Right-handed 310
Helix 17
AB8
B
191 195Right-handed 310
Helix 18
AB9
B
245 258Right-handed alpha
Helix 19
AC1
B
279 294Right-handed alpha
Helix 20
AC2
B
334 355Right-handed alpha
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There are 10 sheets in PDB entry 5Y0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
59 65anti-parallel
Strand 3
A
70 87anti-parallel
Strand 4
A
170 171first strand
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
140 144anti-parallel
Strand 3
A
100 107parallel
Strand 4
A
70 87anti-parallel
Strand 5
A
59 65anti-parallel
Strand 6
A
309 318first strand
Strand 7
A
268 276parallel
Strand 8
A
210 218anti-parallel
Strand 9
A
201 207anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
173 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
196 197anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
223 225anti-parallel
Strand 3
A
298 299anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
70 88anti-parallel
Strand 4
B
170 171first strand
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
140 144anti-parallel
Strand 3
B
100 107parallel
Strand 4
B
70 88anti-parallel
Strand 5
B
59 65anti-parallel
Strand 6
B
308 318first strand
Strand 7
B
268 276parallel
Strand 8
B
210 218anti-parallel
Strand 9
B
201 207anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
173 176anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
196 197anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 233first strand
Strand 2
B
223 225anti-parallel
Strand 3
B
298 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il