Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y0R entry

There is 1 chain in PDB entry 5Y0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1THR 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5Y0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
51 62Right-handed alpha
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
78 94Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
122 135Right-handed alpha
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
159 165Right-handed 310
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
221 228Right-handed alpha
Helix 12
AB3
A
230 243Right-handed alpha
Helix 13
AB4
A
249 264Right-handed alpha
Helix 14
AB5
A
265 272Right-handed alpha
Helix 15
AB6
A
278 290Right-handed alpha
Helix 16
AB7
A
292 301Right-handed alpha
Helix 17
AB8
A
306 319Right-handed alpha
Helix 18
AB9
A
322 333Right-handed alpha
Helix 19
AC1
A
345 357Right-handed alpha
Helix 20
AC2
A
367 375Right-handed alpha
Helix 21
AC3
A
380 400Right-handed alpha
Helix 22
AC4
A
404 409Right-handed 310
Helix 23
AC5
A
411 416Right-handed alpha
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There are 2 sheets in PDB entry 5Y0R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
98 103parallel
Strand 3
A
3 8parallel
Strand 4
A
32 37parallel
Strand 5
A
66 69parallel
Strand 6
A
337 343anti-parallel
Strand 7
A
361 362parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
98 103parallel
Strand 3
A
3 8parallel
Strand 4
A
32 37parallel
Strand 5
A
66 69parallel
Strand 6
A
337 343anti-parallel
Strand 7
A
419 421parallel
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