Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y0S entry

There are 8 chains in PDB entry 5Y0S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 41
A
 GLN 43ARG 408
A
 GLY 410THR 423
B
 MET 1PHE 41
B
 GLN 43ARG 408
B
 GLY 410THR 423
C
 MET 1PHE 41
C
 GLN 43PRO 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 5Y0S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
51 62Right-handed alpha
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
107 121Right-handed alpha
Helix 6
AA6
A
122 135Right-handed alpha
Helix 7
AA7
A
138 154Right-handed alpha
Helix 8
AA8
A
157 165Right-handed 310
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
230 243Right-handed alpha
Helix 13
AB4
A
249 252Right-handed 310
Helix 14
AB5
A
253 262Right-handed alpha
Helix 15
AB6
A
265 271Right-handed alpha
Helix 16
AB7
A
278 290Right-handed alpha
Helix 17
AB8
A
292 301Right-handed alpha
Helix 18
AB9
A
306 319Right-handed alpha
Helix 19
AC1
A
322 333Right-handed alpha
Helix 20
AC2
A
345 357Right-handed alpha
Helix 21
AC3
A
364 366Right-handed 310
Helix 22
AC4
A
367 375Right-handed alpha
Helix 23
AC5
A
380 400Right-handed alpha
Helix 24
AC6
A
404 408Right-handed 310
Helix 25
AC7
A
411 416Right-handed alpha
Helix 26
AC8
B
14 29Right-handed alpha
Helix 27
AC9
B
51 62Right-handed alpha
Helix 28
AD1
B
71 76Right-handed alpha
Helix 29
AD2
B
78 93Right-handed alpha
Helix 30
AD3
B
107 121Right-handed alpha
Helix 31
AD4
B
122 134Right-handed alpha
Helix 32
AD5
B
138 154Right-handed alpha
Helix 33
AD6
B
157 165Right-handed 310
Helix 34
AD7
B
166 182Right-handed alpha
Helix 35
AD8
B
209 219Right-handed alpha
Helix 36
AD9
B
221 227Right-handed alpha
Helix 37
AE1
B
230 243Right-handed alpha
Helix 38
AE2
B
249 252Right-handed 310
Helix 39
AE3
B
253 262Right-handed alpha
Helix 40
AE4
B
265 272Right-handed alpha
Helix 41
AE5
B
278 290Right-handed alpha
Helix 42
AE6
B
292 301Right-handed alpha
Helix 43
AE7
B
306 319Right-handed alpha
Helix 44
AE8
B
322 333Right-handed alpha
Helix 45
AE9
B
344 357Right-handed alpha
Helix 46
AF1
B
364 366Right-handed 310
Helix 47
AF2
B
367 375Right-handed alpha
Helix 48
AF3
B
380 400Right-handed alpha
Helix 49
AF4
B
404 408Right-handed 310
Helix 50
AF5
B
411 416Right-handed alpha
Helix 51
AF6
C
14 29Right-handed alpha
Helix 52
AF7
C
51 62Right-handed alpha
Helix 53
AF8
C
71 76Right-handed alpha
Helix 54
AF9
C
78 93Right-handed alpha
Helix 55
AG1
C
107 121Right-handed alpha
Helix 56
AG2
C
122 135Right-handed alpha
Helix 57
AG3
C
138 155Right-handed alpha
Helix 58
AG4
C
157 165Right-handed 310
Helix 59
AG5
C
166 183Right-handed alpha
Helix 60
AG6
C
209 219Right-handed alpha
Helix 61
AG7
C
221 227Right-handed alpha
Helix 62
AG8
C
230 243Right-handed alpha
Helix 63
AG9
C
249 252Right-handed 310
Helix 64
AH1
C
253 263Right-handed alpha
Helix 65
AH2
C
265 271Right-handed alpha
Helix 66
AH3
C
278 290Right-handed alpha
Helix 67
AH4
C
292 301Right-handed alpha
Helix 68
AH5
C
306 319Right-handed alpha
Helix 69
AH6
C
322 333Right-handed alpha
Helix 70
AH7
C
344 357Right-handed alpha
Helix 71
AH8
C
364 366Right-handed 310
Helix 72
AH9
C
367 375Right-handed alpha
Helix 73
AI1
C
380 400Right-handed alpha
Helix 74
AI2
C
404 408Right-handed 310
Helix 75
AI3
C
411 416Right-handed alpha
Helix 76
AI4
D
14 29Right-handed alpha
Helix 77
AI5
D
51 62Right-handed alpha
Helix 78
AI6
D
71 76Right-handed alpha
Helix 79
AI7
D
78 93Right-handed alpha
Helix 80
AI8
D
107 121Right-handed alpha
Helix 81
AI9
D
122 135Right-handed alpha
Helix 82
AJ1
D
138 151Right-handed alpha
Helix 83
AJ2
D
158 164Right-handed 310
Helix 84
AJ3
D
166 183Right-handed alpha
Helix 85
AJ4
D
209 219Right-handed alpha
Helix 86
AJ5
D
221 227Right-handed alpha
Helix 87
AJ6
D
230 243Right-handed alpha
Helix 88
AJ7
D
249 252Right-handed 310
Helix 89
AJ8
D
253 263Right-handed alpha
Helix 90
AJ9
D
265 271Right-handed alpha
Helix 91
AK1
D
278 290Right-handed alpha
Helix 92
AK2
D
292 301Right-handed alpha
Helix 93
AK3
D
306 319Right-handed alpha
Helix 94
AK4
D
322 333Right-handed alpha
Helix 95
AK5
D
345 357Right-handed alpha
Helix 96
AK6
D
364 366Right-handed 310
Helix 97
AK7
D
367 375Right-handed alpha
Helix 98
AK8
D
380 400Right-handed alpha
Helix 99
AK9
D
404 408Right-handed 310
Helix 100
AL1
D
411 416Right-handed alpha
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There are 8 sheets in PDB entry 5Y0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
98 103parallel
Strand 3
A
3 8parallel
Strand 4
A
32 38parallel
Strand 5
A
66 70parallel
Strand 6
A
337 343anti-parallel
Strand 7
A
361 362parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
98 103parallel
Strand 3
A
3 8parallel
Strand 4
A
32 38parallel
Strand 5
A
66 70parallel
Strand 6
A
337 343anti-parallel
Strand 7
A
419 421parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
98 103parallel
Strand 3
B
3 8parallel
Strand 4
B
32 38parallel
Strand 5
B
66 70parallel
Strand 6
B
337 343anti-parallel
Strand 7
B
361 362parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
98 103parallel
Strand 3
B
3 8parallel
Strand 4
B
32 38parallel
Strand 5
B
66 70parallel
Strand 6
B
337 343anti-parallel
Strand 7
B
419 421parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
98 103parallel
Strand 3
C
3 8parallel
Strand 4
C
32 38parallel
Strand 5
C
66 70parallel
Strand 6
C
337 343anti-parallel
Strand 7
C
361 362parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
98 103parallel
Strand 3
C
3 8parallel
Strand 4
C
32 38parallel
Strand 5
C
66 70parallel
Strand 6
C
337 343anti-parallel
Strand 7
C
419 421parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 192first strand
Strand 2
D
98 103parallel
Strand 3
D
3 8parallel
Strand 4
D
32 38parallel
Strand 5
D
66 70parallel
Strand 6
D
337 343anti-parallel
Strand 7
D
361 362parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 192first strand
Strand 2
D
98 103parallel
Strand 3
D
3 8parallel
Strand 4
D
32 38parallel
Strand 5
D
66 70parallel
Strand 6
D
337 343anti-parallel
Strand 7
D
419 421parallel
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