Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y10 entry

There is 1 chain in PDB entry 5Y10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 23ASN 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5Y10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
43 53Right-handed alpha
Helix 2
AA2
C
54 66Right-handed alpha
Helix 3
AA3
C
76 80Right-handed 310
Helix 4
AA4
C
88 92Right-handed 310
Helix 5
AA5
C
97 104Right-handed alpha
Helix 6
AA6
C
160 163Right-handed 310
Helix 7
AA7
C
187 202Right-handed alpha
Helix 8
AA8
C
252 254Right-handed 310
Helix 9
AA9
C
267 277Right-handed alpha
Helix 10
AB1
C
283 291Right-handed alpha
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There are 7 sheets in PDB entry 5Y10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
166 168parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
172 175parallel
Strand 3
C
129 133parallel
Strand 4
C
138 142anti-parallel
Strand 5
C
109 111parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
156 158anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
327 337anti-parallel
Strand 3
C
205 208anti-parallel
Strand 4
C
211 212anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
327 337anti-parallel
Strand 3
C
223 231anti-parallel
Strand 4
C
237 240anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 248first strand
Strand 2
C
313 318anti-parallel
Strand 3
C
321 323anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 265first strand
Strand 2
C
256 260anti-parallel
Strand 3
C
303 307anti-parallel
Strand 4
C
281 282parallel
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