Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y15 entry

There are 2 chains in PDB entry 5Y15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 159
B
 LEU 19SER 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5Y15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 35Right-handed 310
Helix 2
AA2
A
36 43Right-handed alpha
Helix 3
AA3
A
78 95Right-handed alpha
Helix 4
AA4
A
108 122Right-handed alpha
Helix 5
AA5
A
125 137Right-handed alpha
Helix 6
AA6
A
143 159Right-handed alpha
Helix 7
AA7
B
30 35Right-handed 310
Helix 8
AA8
B
36 43Right-handed alpha
Helix 9
AA9
B
78 95Right-handed alpha
Helix 10
AB1
B
108 122Right-handed alpha
Helix 11
AB2
B
125 137Right-handed alpha
Helix 12
AB3
B
143 161Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y15.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
45 50parallel
Strand 5
A
64 67parallel
Strand 6
B
64 68anti-parallel
Strand 7
B
45 51parallel
Strand 8
B
98 102parallel
Strand 9
B
26 29parallel
Strand 10
B
20 23anti-parallel
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